# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jk0A 419 9.72e-40 a.25.1.2 63142 1xsm 390 1.11e-39 1w68A 390 2.06e-39 a.25.1.2 109216 1av8A 340 7.41e-39 a.25.1.2 16796 1mxrA 375 7.80e-39 a.25.1.2 85197 2rccA 346 8.23e-39 1syyA 346 9.22e-39 a.25.1.2 106126 1biqA 375 1.16e-38 a.25.1.2 16786 1ribA 375 1.92e-38 a.25.1.2 16788 1xikA 375 5.32e-38 a.25.1.2 16784 1kgnA 329 9.13e-38 a.25.1.2 68584 1r2fA 319 4.83e-37 a.25.1.2 16800 1jk0B 345 1.68e-34 a.25.1.2 63143 1t0qB 330 0.000277 a.25.1.2 106221 2oc5A 244 0.000841 2incB 322 0.001880 a.25.1.2 137525 1mhyB 395 0.007868 a.25.1.2 16781 1t0qA 498 0.04453 a.25.1.2 106220 1za0A 275 0.1826 a.25.1.2 124774 1mhyD 521 2.914 a.25.1.2 16780 3chhA 336 3.426 2f2gA 221 5.754 a.132.1.3 132816 1mtyD 512 7.304 a.25.1.2 16742 2inpA 494 7.417 1nu7D 282 8.706 a.8.6.1,a.8.6.1 92191,92192 1rcwA 231 10.52 a.132.1.4 97299 2q4xA 221 10.79 a.132.1.3 139880 1uddA 226 12.76 a.132.1.3 107776 1wwmA 190 13.11 a.132.1.3 121363 1yuzA 202 13.32 a.25.1.1,g.41.5.1 124077,124078 2jcdA 345 13.39 2gh0A 213 14.74 2inpC 328 15.55 3cetA 334 16.27 1t1uA 639 17.72 c.43.1.3,c.43.1.3 119110,119111 1z72A 225 18.10 a.132.1.3 124583 2uw1A 338 18.70 2incA 491 19.33 a.25.1.2 137524 2cwlA 302 20.25 a.25.1.3 130927 2h4tA 626 22.04 2vebA 195 26.65 1bi0 226 28.38 1dhnA 121 34.05 d.96.1.3 40663 2a4aA 281 34.26 c.1.10.1 126150 1y1nA 291 35.71 1aru 344 36.91 2gsqA 202 37.11 a.45.1.1,c.47.1.5 17715,33009 1rtwA 220 38.21 a.132.1.3 97823 1oq9A 363 39.72 a.25.1.2 87257 2oixA 186 44.93 2bvfA 459 46.29 1sz9A 144 46.92 a.118.9.4 106139 1hd7A 318 47.10 d.151.1.1 41780 1inzA 148 47.14 a.118.9.1 62610 1o9iA 266 50.63 a.25.1.3 92671 1icwA 72 53.18 d.9.1.1 37357 2exrA 524 56.58 1afrA 345 56.73 a.25.1.2 16805 1l2iA 261 57.28 a.123.1.1 73503 1yakA 263 61.25 a.132.1.3 122833 2dqbA 376 63.56 1eyhA 144 63.58 a.118.9.1 19214 2debA 653 65.48 1yp2A 451 65.75 b.81.1.4,c.68.1.6 123798,123799 1h0aA 158 65.99 a.118.9.1 76434 2itbA 206 69.09 1zunB 434 69.29 b.43.3.1,b.44.1.1,c.37.1.8 125677,125678,125679 1vdeA 454 70.68 b.86.1.2,d.95.2.2,d.95.2.2 28378,40581,40582 1xl7A 612 71.99 c.43.1.3,c.43.1.3 115438,115439 1o0yA 260 73.82 c.1.10.1 80756 1arv 344 73.87 1mgsA 73 74.36 d.9.1.1 37389 1nm8A 616 78.24 c.43.1.3,c.43.1.3 85872,85873 1tvxA 75 83.25 d.9.1.1 37441 1sqlA 146 83.56 d.96.1.3 105925 1tyhA 248 86.04 a.132.1.3 107458