# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jk0A 419 1.03e-36 a.25.1.2 63142 1xsm 390 1.84e-36 1w68A 390 4.10e-36 a.25.1.2 109216 2rccA 346 1.47e-35 1biqA 375 1.69e-35 a.25.1.2 16786 1mxrA 375 1.80e-35 a.25.1.2 85197 1ribA 375 2.38e-35 a.25.1.2 16788 1av8A 340 2.59e-35 a.25.1.2 16796 1syyA 346 3.21e-35 a.25.1.2 106126 1xikA 375 6.97e-35 a.25.1.2 16784 1kgnA 329 1.22e-34 a.25.1.2 68584 1r2fA 319 5.20e-34 a.25.1.2 16800 1jk0B 345 4.06e-32 a.25.1.2 63143 2oc5A 244 0.002278 1t0qA 498 0.01672 a.25.1.2 106220 1t0qB 330 0.01926 a.25.1.2 106221 2incB 322 0.07231 a.25.1.2 137525 1mhyB 395 0.0997 a.25.1.2 16781 1za0A 275 0.2041 a.25.1.2 124774 2incA 491 0.3872 a.25.1.2 137524 2inpA 494 0.3889 1uddA 226 2.816 a.132.1.3 107776 1rcwA 231 3.363 a.132.1.4 97299 1mhyD 521 4.798 a.25.1.2 16780 2cwlA 302 4.963 a.25.1.3 130927 3chhA 336 4.981 1o9iA 266 12.37 a.25.1.3 92671 1mtyD 512 12.49 a.25.1.2 16742 1bi0 226 13.93 1jkvA 266 15.14 a.25.1.3 71719 1sz9A 144 15.65 a.118.9.4 106139 3bqwA 351 17.42 1hd7A 318 19.50 d.151.1.1 41780 1b04A 318 20.15 d.142.2.2 41579 1h0aA 158 29.82 a.118.9.1 76434 1wwmA 190 30.29 a.132.1.3 121363 1yuzA 202 32.19 a.25.1.1,g.41.5.1 124077,124078 1rtwA 220 32.29 a.132.1.3 97823 2jcdA 345 32.44 1w99A 558 33.57 1dhnA 121 34.31 d.96.1.3 40663 2yzsA 315 35.31 1nb5I 98 37.87 d.17.1.2 80381 1jcfA 344 38.73 c.55.1.1,c.55.1.1 62878,62879 1y7oA 218 38.92 c.14.1.1 122701 2oixA 186 39.03 1bix 287 43.17 2q4xA 221 43.71 a.132.1.3 139880 2dtr 226 45.70 2oy0A 262 45.97 1yakA 263 53.02 a.132.1.3 122833 3cetA 334 54.38 1cewI 108 55.02 d.17.1.2 37999 1l2iA 261 56.41 a.123.1.1 73503 2dj6A 115 56.43 1xhnA 184 56.77 b.45.1.1 122007 1xl7A 612 57.38 c.43.1.3,c.43.1.3 115438,115439 2dobA 83 58.76 1t1uA 639 60.03 c.43.1.3,c.43.1.3 119110,119111 2ftuA 118 61.04 a.13.1.1 134082 1lycA 343 65.47 a.93.1.1 74344 1aqkL 216 67.82 b.1.1.1,b.1.1.2 20192,21208 1oxjA 173 70.62 a.60.1.2,a.118.1.13 87517,87518 1mwwA 128 74.45 d.80.1.4 91483 3bqpA 80 74.71 2gb4A 252 75.30 1r1bA 59 76.05 a.16.1.3 16396 1arv 344 76.40 2bvfA 459 77.16 1d2iA 223 79.76 c.52.1.5 33297 1m12A 84 79.87 a.64.1.1 84745 1g0rA 293 80.12 c.68.1.6 34532 2d1eA 248 81.77 1thmA 279 81.78 c.41.1.1 32544 1ay1H 213 82.74 b.1.1.1,b.1.1.2 20243,21255 2a4aA 281 84.57 c.1.10.1 126150 2itbA 206 85.20 1roaA 122 86.08 d.17.1.2 105024 1eqkA 102 86.71 d.17.1.2 37998