# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1xsm 390 2.31e-25 1w68A 390 5.63e-25 a.25.1.2 109216 1mxrA 375 1.72e-24 a.25.1.2 85197 1av8A 340 2.82e-24 a.25.1.2 16796 1biqA 375 4.69e-24 a.25.1.2 16786 1ribA 375 5.79e-24 a.25.1.2 16788 1jk0A 419 8.64e-24 a.25.1.2 63142 1kgnA 329 1.19e-23 a.25.1.2 68584 1xikA 375 1.31e-23 a.25.1.2 16784 2rccA 346 2.68e-23 1r2fA 319 4.97e-23 a.25.1.2 16800 1syyA 346 8.25e-23 a.25.1.2 106126 1jk0B 345 2.31e-19 a.25.1.2 63143 1rcwA 231 0.002089 a.132.1.4 97299 1mhyB 395 0.005002 a.25.1.2 16781 1t0qB 330 0.01313 a.25.1.2 106221 2inpC 328 0.05498 2incB 322 0.09473 a.25.1.2 137525 2oc5A 244 0.09872 1t0qA 498 0.3710 a.25.1.2 106220 3chhA 336 0.6824 2incA 491 0.9205 a.25.1.2 137524 1mtyD 512 1.409 a.25.1.2 16742 2h4tA 626 2.715 2zcoA 293 4.076 2jcdA 345 4.665 2debA 653 4.723 1ggzA 148 4.903 a.39.1.5 70176 1afrA 345 6.941 a.25.1.2 16805 1mhyD 521 7.806 a.25.1.2 16780 1ie9A 259 8.478 a.123.1.1 62318 2qzcA 214 9.414 1uddA 226 10.10 a.132.1.3 107776 2f3yA 148 10.20 1lkvX 232 10.34 a.118.14.1 73980 1g5yA 238 11.61 a.123.1.1 60294 1or4A 178 12.41 a.1.1.2 93447 2j5bA 348 12.52 1mtyB 384 13.65 a.25.1.2 16740 1c1dA 355 14.35 c.2.1.7,c.58.1.1 30270,33918 1m7sA 484 14.47 e.5.1.1 74574 2a2mA 258 16.05 a.132.1.3 126039 1acvA 189 16.97 c.47.1.13 90328 1hg4A 279 17.00 a.123.1.1 19333 1ialA 453 17.70 a.118.1.1 19116 1ac1A 189 19.56 c.47.1.13 90326 2obhA 143 21.18 1xl7A 612 21.29 c.43.1.3,c.43.1.3 115438,115439 2p0tA 176 21.64 1exrA 148 22.37 a.39.1.5 17299 1wmuB 146 22.43 a.1.1.2 109417 2itbA 206 22.69 2inpA 494 23.33 2o5gA 148 24.09 1e7uA 961 26.77 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1bi0 226 28.19 2uw1A 338 28.76 1topA 162 30.54 a.39.1.5 17223 2oifA 162 30.90 2aq4A 434 31.05 1gnlA 544 31.17 e.26.1.1 70287 1urvA 190 31.43 a.1.1.2 113414 1oq9A 363 31.63 a.25.1.2 87257 2gv5A 161 33.45 1n46A 258 33.45 a.123.1.1 85315 1upvA 257 34.19 a.123.1.1 113398 1jv1A 505 34.91 c.68.1.5 71892 1tadA 324 35.15 a.66.1.1,c.37.1.8 18194,32077 2h1nA 567 36.14 1jcrA 377 36.63 a.118.6.1 66506 1gai 472 38.39 1a2xA 159 40.71 a.39.1.5 17251 1bw9A 356 40.89 c.2.1.7,c.58.1.1 30274,33922 1za0A 275 41.62 a.25.1.2 124774 2ao9A 155 42.37 a.4.1.17 127069 1cll 148 42.85 1up6A 416 43.17 c.2.1.5,d.162.1.2 107976,107977 1de4C 640 45.61 a.48.2.1,c.8.4.1,c.56.5.5 17779,30760,33848 1bpoA 494 46.01 a.118.1.4,b.69.6.1 19143,27670 1yyaA 250 46.04 2ccmA 191 46.81 2osxA 481 47.82 1j77A 209 50.09 a.132.1.2 62674 2h5nA 133 50.71 1z72A 225 51.48 a.132.1.3 124583 1e8yA 966 51.60 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1wpbA 172 52.34 a.233.1.1 114783 1mmoB 384 52.45 a.25.1.2 16768 1sk7A 198 52.74 a.132.1.2 105671 1gw5S 142 53.06 d.110.4.2 70633 1sl8A 191 53.94 a.39.1.5 112099 1jmsA 381 54.60 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1sq5A 308 54.97 c.37.1.6 105882 1fvkA 189 56.01 c.47.1.13 90351 2p1tA 240 57.54 1mvwA 840 58.44 i.15.1.1 79523 2fnaA 357 58.48 a.4.5.11,c.37.1.20 133809,133810 1g2nA 264 58.76 a.123.1.1 60227 1db1A 259 59.22 a.123.1.1 19329 3b5oA 244 61.21 1htjF 210 61.48 a.91.1.1 61254 1b9bA 255 62.82 c.1.1.1 28531 1ewaA 137 63.37 a.1.1.2 15639 1o08A 221 64.25 c.108.1.6 86525 2c1mA 424 64.97 1f5xA 208 65.20 a.87.1.1 18516 2j3xA 431 65.90 1uxtA 501 66.58 c.82.1.1 108125 1di1A 300 67.52 a.128.1.4 19446 2v1fA 153 67.55 a.1.1.2 140055 1u2zA 433 67.83 c.66.1.31 107626 2i4iA 417 69.53 2b6cA 220 70.49 a.118.1.17 127983 2o8pA 227 70.66 1ncx 162 72.81 1a01B 146 73.59 a.1.1.2 15448 1qe3A 489 74.10 c.69.1.1 34630 1ornA 226 74.61 a.96.1.1 87342 2yqcA 486 74.75 1ng6A 148 76.75 a.182.1.1 85670 2dc3A 193 77.20 1fhjB 146 77.51 a.1.1.2 59838 2vglS 142 78.60 2qg7A 458 79.47 2gxgA 146 80.29 1b89A 449 80.62 a.118.1.3 19138 1miwA 404 81.22 a.173.1.1,d.218.1.4 79162,79163 1b33B 161 81.91 a.1.1.3 15650 1hlbA 158 81.97 a.1.1.2 15625 2qfnA 138 84.00 1hlb 158 85.69 1nm8A 616 85.86 c.43.1.3,c.43.1.3 85872,85873 3b9pA 297 87.72 3cjnA 162 88.11 1vz0A 230 88.75 a.4.14.1,d.268.1.1 108929,108930