# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w68A 390 3.53e-40 a.25.1.2 109216 2rccA 346 1.25e-39 1syyA 346 1.34e-39 a.25.1.2 106126 1mxrA 375 2.04e-39 a.25.1.2 85197 1kgnA 329 1.21e-38 a.25.1.2 68584 1jk0B 345 5.32e-36 a.25.1.2 63143 3chhA 336 2.64e-17 2jcdA 345 6.63e-14 1mhyB 395 7.38e-08 a.25.1.2 16781 2inpC 328 1.40e-07 2incA 491 9.02e-07 a.25.1.2 137524 1mtyD 512 1.45e-06 a.25.1.2 16742 2oc5A 244 2.35e-06 1mtyB 384 3.95e-06 a.25.1.2 16740 1t0qA 498 1.08e-05 a.25.1.2 106220 1oq9A 363 1.11e-05 a.25.1.2 87257 2incB 322 1.33e-05 a.25.1.2 137525 2j2fA 363 1.94e-05 2uw1A 338 2.95e-05 2inpA 494 2.96e-05 1za0A 275 9.69e-05 a.25.1.2 124774 1t0qB 330 0.000557 a.25.1.2 106221 1z72A 225 0.002512 a.132.1.3 124583 1otkA 249 0.003460 a.25.1.2 93521 2a2mA 258 0.004274 a.132.1.3 126039 1tyhA 248 0.007033 a.132.1.3 107458 1rtwA 220 0.01176 a.132.1.3 97823 1yakA 263 0.01240 a.132.1.3 122833 2qcxA 263 0.03073 2itbA 206 0.03230 1rcwA 231 0.04030 a.132.1.4 97299 1uddA 226 0.1098 a.132.1.3 107776 3bjdA 332 0.2506 2q4xA 221 0.4039 a.132.1.3 139880 2qzcA 214 0.5251 1otvA 259 0.8449 a.132.1.4 93526 1o9iA 266 1.087 a.25.1.3 92671 2cwlA 302 2.687 a.25.1.3 130927 2v8tA 302 3.782 1f7uA 607 4.361 a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 2f2gA 221 5.005 a.132.1.3 132816 1wovA 250 6.470 a.132.1.1 121124 2tct 207 10.76 1yuzA 202 11.84 a.25.1.1,g.41.5.1 124077,124078 1fx7A 230 13.14 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1zmdA 474 13.36 1nn5A 215 13.96 c.37.1.1 85892 1uw0A 117 15.18 g.39.1.12 108063 2izrA 330 15.51 1zpyA 95 18.00 a.25.1.5 125479 1ffyA 917 18.79 a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1zrhA 274 19.27 2obhA 143 19.89 2fkzA 155 20.42 a.25.1.1 133688 1rh5C 53 20.52 f.23.29.1 97466 1aquA 297 22.25 c.37.1.5 31942 1t8tA 271 22.65 c.37.1.5 106685 3b5oA 244 22.78 3cnhA 200 23.49 1j93A 353 24.32 c.1.22.1 66454 1g3mA 294 24.92 c.37.1.5 83268 1gntA 553 25.26 e.26.1.1 70290 2qf9A 179 25.60 1zk7A 467 25.79 3cdlA 203 25.86 1qq5A 253 27.87 c.108.1.1 43327 2jnsA 90 28.06 1j99A 293 29.23 c.37.1.5 71618 3bfxA 296 29.88 1e7uA 961 30.58 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1khvA 516 30.78 e.8.1.4 68627 1fecA 490 32.45 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2aplA 157 33.35 a.258.1.1 127132 1r03A 182 33.94 a.25.1.1 104675 1u09A 476 34.00 e.8.1.4 107545 1zd1A 284 34.47 2o8iA 165 35.40 2cihA 183 37.15 1wy2A 351 37.19 1alvA 173 37.28 a.39.1.8 17370 1eumA 165 37.48 a.25.1.1 59507 1at3A 247 37.87 b.57.1.1 27021 2qorA 204 39.19 2gwhA 298 40.22 1fmjA 351 40.36 c.37.1.5 59879 2iyvA 184 43.01 c.37.1.2 137812 1lkoA 191 43.17 a.25.1.1,g.41.5.1 78063,78064 1iicA 422 43.48 d.108.1.2,d.108.1.2 62422,62423 1te2A 226 44.15 c.108.1.6 106792 1j30A 144 45.12 a.25.1.1 90806 2d5vA 164 46.96 1ggzA 148 48.02 a.39.1.5 70176 1ls6A 295 48.77 c.37.1.5 91115 2b1pA 355 49.58 d.144.1.7 127672 2qqyA 149 50.03 2infA 359 50.06 1qd1A 325 50.97 d.58.34.1,d.58.34.1 39493,39494 1knzA 164 54.33 e.34.1.1 68709 1vlgA 176 55.11 a.25.1.1 108816 2pkeA 251 56.28 3c85A 183 58.16 1s3qA 173 59.74 a.25.1.1 118848 1wzdA 215 60.89 a.132.1.1 121493 2vprA 207 61.76 2h5gA 463 63.51 2doaA 104 63.99 2p1jA 186 64.81 1lb3A 182 64.98 a.25.1.1 77873 1rp3A 239 65.40 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 2o7oA 207 65.85 a.4.1.9,a.121.1.1 138930,138931 2f3yA 148 68.70 2ewfA 610 69.89 1g7oA 215 70.38 a.45.1.1,c.47.1.5 60332,60333 2v3zA 440 71.37 1mo9A 523 75.04 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1topA 162 75.11 a.39.1.5 17223 1m85A 484 75.18 e.5.1.1 74578 1sxvA 172 79.26 1i40A 175 80.04 b.40.5.1 66024 2au7A 175 80.86 3bqpA 80 82.82 1r3sA 367 83.50 c.1.22.1 96963 2gv5A 161 83.74 2h4tA 626 84.34 1hu3A 260 86.17 a.118.1.14 19137