# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w68A 390 6.43e-38 a.25.1.2 109216 1mxrA 375 3.62e-37 a.25.1.2 85197 1syyA 346 4.41e-37 a.25.1.2 106126 2rccA 346 4.46e-37 1kgnA 329 4.41e-36 a.25.1.2 68584 1jk0B 345 3.16e-34 a.25.1.2 63143 3chhA 336 1.85e-16 2jcdA 345 4.56e-13 1mhyB 395 7.46e-08 a.25.1.2 16781 2inpC 328 8.37e-08 2incA 491 7.81e-07 a.25.1.2 137524 1mtyD 512 2.33e-06 a.25.1.2 16742 2oc5A 244 6.89e-06 1mtyB 384 7.54e-06 a.25.1.2 16740 1t0qA 498 9.37e-06 a.25.1.2 106220 2incB 322 1.07e-05 a.25.1.2 137525 2inpA 494 1.85e-05 1oq9A 363 2.70e-05 a.25.1.2 87257 2j2fA 363 5.30e-05 2uw1A 338 8.20e-05 1t0qB 330 0.000281 a.25.1.2 106221 1za0A 275 0.000508 a.25.1.2 124774 1z72A 225 0.005691 a.132.1.3 124583 2a2mA 258 0.005915 a.132.1.3 126039 1tyhA 248 0.007216 a.132.1.3 107458 1yakA 263 0.009777 a.132.1.3 122833 1otkA 249 0.01329 a.25.1.2 93521 1rtwA 220 0.02373 a.132.1.3 97823 2qcxA 263 0.03908 1rcwA 231 0.05337 a.132.1.4 97299 2itbA 206 0.09925 1uddA 226 0.1366 a.132.1.3 107776 2q4xA 221 0.2551 a.132.1.3 139880 3bjdA 332 0.5212 2qzcA 214 0.8793 1otvA 259 1.003 a.132.1.4 93526 1o9iA 266 1.268 a.25.1.3 92671 2cwlA 302 3.151 a.25.1.3 130927 1uw0A 117 3.770 g.39.1.12 108063 2f2gA 221 5.370 a.132.1.3 132816 1wovA 250 5.943 a.132.1.1 121124 1fx7A 230 7.008 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1ffyA 917 9.035 a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1f7uA 607 13.85 a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 2izrA 330 14.21 2v8tA 302 15.00 1gntA 553 15.82 e.26.1.1 70290 1aquA 297 16.84 c.37.1.5 31942 2pkeA 251 17.50 2fkzA 155 19.47 a.25.1.1 133688 1j93A 353 19.56 c.1.22.1 66454 1wwmA 190 19.70 a.132.1.3 121363 1u09A 476 21.28 e.8.1.4 107545 3cdlA 203 22.00 1zmdA 474 22.16 1rh5C 53 22.62 f.23.29.1 97466 1zrhA 274 23.10 3cklA 298 25.51 3cnhA 200 27.18 2qf9A 179 27.72 2o8iA 165 30.51 1qq5A 253 32.11 c.108.1.1 43327 1eumA 165 32.24 a.25.1.1 59507 2cihA 183 33.76 1khvA 516 34.03 e.8.1.4 68627 2infA 359 34.48 1wy2A 351 34.57 1sxvA 172 35.89 1zpyA 95 36.92 a.25.1.5 125479 2qqyA 149 37.33 1g3mA 294 38.60 c.37.1.5 83268 1e7uA 961 39.31 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1i40A 175 39.78 b.40.5.1 66024 1te2A 226 39.84 c.108.1.6 106792 2au7A 175 40.55 2aplA 157 40.74 a.258.1.1 127132 2doaA 104 41.59 2gwhA 298 42.14 1j99A 293 42.38 c.37.1.5 71618 2obhA 143 42.66 1alvA 173 42.69 a.39.1.8 17370 1r03A 182 42.77 a.25.1.1 104675 1yuzA 202 44.00 a.25.1.1,g.41.5.1 124077,124078 3bqpA 80 44.64 1t8tA 271 45.12 c.37.1.5 106685 1nn5A 215 45.29 c.37.1.1 85892 3b5oA 244 47.46 1wn1A 356 47.51 1lb3A 182 47.59 a.25.1.1 77873 1fmjA 351 47.69 c.37.1.5 59879 2ewfA 610 48.29 1krqA 167 49.04 a.25.1.1 68855 1fecA 490 49.21 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2ejnA 153 49.78 a.101.1.1,a.101.1.1 132279,132280 1zk7A 467 49.82 2qypA 91 49.90 1iicA 422 51.91 d.108.1.2,d.108.1.2 62422,62423 3bfxA 296 52.41 1s3qA 173 52.93 a.25.1.1 118848 1zrnA 232 56.80 c.108.1.1 43323 2p1jA 186 56.85 1azsC 388 56.86 a.66.1.1,c.37.1.8 18203,32086 1y66A 52 58.85 1at3A 247 58.93 b.57.1.1 27021 2o3lA 85 60.07 1vlgA 176 61.04 a.25.1.1 108816 2e8vA 340 61.39 2h4tA 626 62.22 1mo9A 523 63.64 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1ls6A 295 64.63 c.37.1.5 91115 2v3vA 723 71.61 1hu3A 260 73.37 a.118.1.14 19137 2nsfA 261 73.90 2tct 207 74.37 1zd1A 284 76.29 1knzA 164 77.75 e.34.1.1 68709 1ggzA 148 78.67 a.39.1.5 70176 2v6vA 156 78.72 1j30A 144 79.18 a.25.1.1 90806 2h5nA 133 80.33 2bqxA 173 82.36 1no7A 604 84.47 e.48.1.1 92016 2oq2A 261 84.56 2g09A 297 85.89 1wpbA 172 86.27 a.233.1.1 114783 2qq9A 226 86.37 1owfB 94 87.94 a.55.1.1 87488