# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w68A 390 2.04e-34 a.25.1.2 109216 1syyA 346 5.63e-34 a.25.1.2 106126 2rccA 346 8.93e-34 1mxrA 375 9.54e-34 a.25.1.2 85197 1kgnA 329 1.10e-32 a.25.1.2 68584 1jk0B 345 4.07e-31 a.25.1.2 63143 3chhA 336 1.08e-14 2jcdA 345 1.90e-11 1mhyB 395 1.63e-07 a.25.1.2 16781 2inpC 328 2.93e-07 2incA 491 1.83e-06 a.25.1.2 137524 1mtyD 512 2.09e-06 a.25.1.2 16742 1mtyB 384 5.44e-06 a.25.1.2 16740 2oc5A 244 9.59e-06 1t0qA 498 9.73e-06 a.25.1.2 106220 2incB 322 1.06e-05 a.25.1.2 137525 2inpA 494 1.42e-05 1oq9A 363 7.31e-05 a.25.1.2 87257 2j2fA 363 0.000208 1t0qB 330 0.000220 a.25.1.2 106221 2uw1A 338 0.000283 1za0A 275 0.000980 a.25.1.2 124774 2a2mA 258 0.008997 a.132.1.3 126039 1otkA 249 0.01047 a.25.1.2 93521 1z72A 225 0.01438 a.132.1.3 124583 1tyhA 248 0.01962 a.132.1.3 107458 1yakA 263 0.03256 a.132.1.3 122833 1rtwA 220 0.03930 a.132.1.3 97823 2qcxA 263 0.09241 1rcwA 231 0.1323 a.132.1.4 97299 3bjdA 332 0.1569 2itbA 206 0.2052 2q4xA 221 0.3738 a.132.1.3 139880 1otvA 259 0.4201 a.132.1.4 93526 1uddA 226 0.5205 a.132.1.3 107776 1o9iA 266 1.644 a.25.1.3 92671 2qzcA 214 1.930 1wovA 250 3.544 a.132.1.1 121124 2cwlA 302 5.569 a.25.1.3 130927 1ffyA 917 6.381 a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 2v8tA 302 8.619 2f2gA 221 8.979 a.132.1.3 132816 1e7uA 961 10.70 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1aquA 297 11.94 c.37.1.5 31942 1fmjA 351 12.05 c.37.1.5 59879 1wwmA 190 12.48 a.132.1.3 121363 1fx7A 230 14.42 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2infA 359 15.61 1g3mA 294 16.67 c.37.1.5 83268 1j99A 293 18.13 c.37.1.5 71618 1zmdA 474 18.46 1t8tA 271 19.23 c.37.1.5 106685 2ps5A 374 19.71 3cdlA 203 19.89 2ejnA 153 20.81 a.101.1.1,a.101.1.1 132279,132280 1zd1A 284 20.95 1zrhA 274 20.98 2h5gA 463 21.47 2izrA 330 23.12 1g7oA 215 24.87 a.45.1.1,c.47.1.5 60332,60333 1uw0A 117 25.02 g.39.1.12 108063 1ggzA 148 25.23 a.39.1.5 70176 2gwhA 298 25.28 2ewfA 610 25.92 2obhA 143 26.19 1f7uA 607 27.10 a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1hu3A 260 27.72 a.118.1.14 19137 1j93A 353 30.04 c.1.22.1 66454 1alvA 173 31.10 a.39.1.8 17370 2fkzA 155 32.64 a.25.1.1 133688 2pexA 153 34.49 1topA 162 34.58 a.39.1.5 17223 2o3lA 85 35.41 3b5oA 244 35.47 2cukA 311 36.13 2d5vA 164 36.28 2aplA 157 36.58 a.258.1.1 127132 1qd1A 325 37.25 d.58.34.1,d.58.34.1 39493,39494 2dvwB 83 37.25 2h5nA 133 38.26 1j30A 144 38.73 a.25.1.1 90806 1rh5C 53 39.97 f.23.29.1 97466 1yuzA 202 39.99 a.25.1.1,g.41.5.1 124077,124078 1zpyA 95 40.19 a.25.1.5 125479 1zkrA 153 40.25 a.101.1.1,a.101.1.1 125209,125210 1vlgA 176 40.54 a.25.1.1 108816 1wy2A 351 40.92 1azsC 388 41.53 a.66.1.1,c.37.1.8 18203,32086 1eumA 165 43.31 a.25.1.1 59507 1hfoA 113 43.47 d.80.1.3 61006 1gntA 553 44.51 e.26.1.1 70290 1m12A 84 48.87 a.64.1.1 84745 2os5A 119 48.95 1ls6A 295 49.62 c.37.1.5 91115 2r5rA 271 51.56 1sxvA 172 52.33 1wzdA 215 53.15 a.132.1.1 121493 1lkoA 191 56.73 a.25.1.1,g.41.5.1 78063,78064 2dobA 83 57.06 1r3sA 367 57.14 c.1.22.1 96963 3cklA 298 57.21 2bv6A 142 57.97 3bqpA 80 58.28 1rhs 296 58.36 1krqA 167 58.56 a.25.1.1 68855 1u09A 476 60.84 e.8.1.4 107545 1ux8A 132 61.09 a.1.1.1 113449 2pgdA 482 64.40 a.100.1.1,c.2.1.6 18778,30190 1mo9A 523 65.82 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 2f3yA 148 65.94 3bfxA 296 68.67 2pgd 482 68.67 2r9zA 463 69.92 1s3qA 173 71.04 a.25.1.1 118848 2jhnA 295 71.84 2g09A 297 71.97 1wpbA 172 72.66 a.233.1.1 114783 2p1jA 186 73.39 1fecA 490 73.95 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2h4tA 626 75.64 2jnsA 90 76.30 2v3zA 440 77.70 1wn1A 356 78.05 2jv3A 110 78.76 1no7A 604 81.06 e.48.1.1 92016 1qq5A 253 81.26 c.108.1.1 43327 1txuA 273 81.38 a.222.1.1 107439 2o8iA 165 84.37 2oq2A 261 85.42 1a2xA 159 85.84 a.39.1.5 17251 2o4tA 100 87.11 1j77A 209 89.47 a.132.1.2 62674