# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w68A 390 6.32e-35 a.25.1.2 109216 1syyA 346 1.43e-34 a.25.1.2 106126 2rccA 346 2.01e-34 1mxrA 375 2.63e-34 a.25.1.2 85197 1kgnA 329 9.05e-34 a.25.1.2 68584 1jk0B 345 8.96e-32 a.25.1.2 63143 3chhA 336 1.52e-15 2jcdA 345 1.63e-12 1mhyB 395 1.15e-06 a.25.1.2 16781 2inpC 328 4.26e-06 2oc5A 244 1.36e-05 2incA 491 5.44e-05 a.25.1.2 137524 1mtyD 512 7.33e-05 a.25.1.2 16742 1oq9A 363 8.53e-05 a.25.1.2 87257 1mtyB 384 8.95e-05 a.25.1.2 16740 2j2fA 363 9.16e-05 2uw1A 338 0.000133 2inpA 494 0.000161 2incB 322 0.000314 a.25.1.2 137525 1za0A 275 0.000379 a.25.1.2 124774 1t0qA 498 0.000756 a.25.1.2 106220 1t0qB 330 0.008076 a.25.1.2 106221 1z72A 225 0.01141 a.132.1.3 124583 2a2mA 258 0.02017 a.132.1.3 126039 2itbA 206 0.02441 1otkA 249 0.02725 a.25.1.2 93521 1rtwA 220 0.02991 a.132.1.3 97823 1tyhA 248 0.06720 a.132.1.3 107458 1rcwA 231 0.1099 a.132.1.4 97299 1yakA 263 0.1353 a.132.1.3 122833 2qcxA 263 0.2874 1uddA 226 0.4976 a.132.1.3 107776 2q4xA 221 1.000 a.132.1.3 139880 3bjdA 332 1.251 1f7uA 607 1.774 a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1o9iA 266 1.803 a.25.1.3 92671 1otvA 259 1.952 a.132.1.4 93526 2cwlA 302 2.815 a.25.1.3 130927 2v8tA 302 3.129 2f2gA 221 4.707 a.132.1.3 132816 2qzcA 214 5.243 1hu3A 260 5.920 a.118.1.14 19137 1uw0A 117 13.00 g.39.1.12 108063 1fx7A 230 16.32 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1qq5A 253 16.87 c.108.1.1 43327 1r03A 182 22.39 a.25.1.1 104675 2qf9A 179 23.02 2fkzA 155 24.02 a.25.1.1 133688 1zk7A 467 24.16 2tct 207 24.26 1u09A 476 25.27 e.8.1.4 107545 2qorA 204 25.69 1khvA 516 27.54 e.8.1.4 68627 2cihA 183 28.10 1yuzA 202 29.37 a.25.1.1,g.41.5.1 124077,124078 1at3A 247 31.83 b.57.1.1 27021 2aplA 157 32.12 a.258.1.1 127132 2izrA 330 32.29 3cdlA 203 34.06 1gntA 553 34.98 e.26.1.1 70290 1wovA 250 35.20 a.132.1.1 121124 1sxvA 172 35.40 1rh5C 53 35.99 f.23.29.1 97466 1nn5A 215 36.23 c.37.1.1 85892 1zmdA 474 36.66 3b5oA 244 37.46 1ux8A 132 37.94 a.1.1.1 113449 3cnhA 200 38.36 1wy2A 351 41.33 2au7A 175 41.34 1e7uA 961 45.31 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1j30A 144 45.48 a.25.1.1 90806 1lb3A 182 46.78 a.25.1.1 77873 1zpyA 95 47.09 a.25.1.5 125479 1aquA 297 49.51 c.37.1.5 31942 2ntoA 201 50.68 1g3mA 294 51.89 c.37.1.5 83268 1iicA 422 51.93 d.108.1.2,d.108.1.2 62422,62423 1fecA 490 53.74 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2qqyA 149 53.85 2pibA 216 54.80 2obhA 143 56.63 1zrhA 274 57.41 1d2nA 272 57.92 c.37.1.20 32428 2ejnA 153 58.49 a.101.1.1,a.101.1.1 132279,132280 1rp3A 239 58.75 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 2h4tA 626 59.82 1i40A 175 60.66 b.40.5.1 66024 2nx4A 194 63.68 1vlgA 176 65.07 a.25.1.1 108816 3crjA 199 66.85 1kgdA 180 66.93 c.37.1.1 68582 1wn1A 356 67.53 1ffyA 917 68.61 a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 2yqzA 263 68.98 1wwmA 190 69.41 a.132.1.3 121363 1alvA 173 69.60 a.39.1.8 17370 1xr4A 509 70.60 c.124.1.2,c.124.1.2 115860,115861 2doaA 104 73.06 3bqpA 80 73.98 2pgdA 482 75.62 a.100.1.1,c.2.1.6 18778,30190 1lkoA 191 77.59 a.25.1.1,g.41.5.1 78063,78064 2o8iA 165 77.68 1te2A 226 79.42 c.108.1.6 106792 2ewfA 610 80.00 1csh 435 84.24 2gkmA 136 86.87 1knzA 164 87.13 e.34.1.1 68709