# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w68A 390 8.40e-35 a.25.1.2 109216 1syyA 346 2.30e-34 a.25.1.2 106126 2rccA 346 3.82e-34 1mxrA 375 4.59e-34 a.25.1.2 85197 1kgnA 329 1.61e-33 a.25.1.2 68584 1jk0B 345 9.67e-32 a.25.1.2 63143 3chhA 336 1.89e-15 2jcdA 345 2.00e-12 1mhyB 395 9.69e-07 a.25.1.2 16781 2inpC 328 2.67e-06 2oc5A 244 1.42e-05 2incA 491 3.57e-05 a.25.1.2 137524 1mtyD 512 5.18e-05 a.25.1.2 16742 2inpA 494 7.93e-05 1mtyB 384 9.84e-05 a.25.1.2 16740 1oq9A 363 0.000108 a.25.1.2 87257 2j2fA 363 0.000124 2uw1A 338 0.000184 2incB 322 0.000200 a.25.1.2 137525 1t0qA 498 0.000410 a.25.1.2 106220 1za0A 275 0.000439 a.25.1.2 124774 1t0qB 330 0.005003 a.25.1.2 106221 1z72A 225 0.01022 a.132.1.3 124583 1otkA 249 0.01803 a.25.1.2 93521 2a2mA 258 0.01997 a.132.1.3 126039 2itbA 206 0.02850 1rtwA 220 0.04431 a.132.1.3 97823 1tyhA 248 0.06994 a.132.1.3 107458 1yakA 263 0.09849 a.132.1.3 122833 1rcwA 231 0.1055 a.132.1.4 97299 2qcxA 263 0.1933 1uddA 226 0.5800 a.132.1.3 107776 3bjdA 332 0.7860 2q4xA 221 1.017 a.132.1.3 139880 1otvA 259 1.406 a.132.1.4 93526 1o9iA 266 1.694 a.25.1.3 92671 1f7uA 607 2.256 a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 2cwlA 302 3.077 a.25.1.3 130927 2v8tA 302 3.544 2qzcA 214 3.989 2f2gA 221 4.874 a.132.1.3 132816 1hu3A 260 7.488 a.118.1.14 19137 1uw0A 117 12.41 g.39.1.12 108063 1qq5A 253 14.52 c.108.1.1 43327 3b5oA 244 14.78 1fx7A 230 17.82 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 3cnhA 200 18.49 1wovA 250 20.18 a.132.1.1 121124 1yuzA 202 20.71 a.25.1.1,g.41.5.1 124077,124078 1e7uA 961 22.63 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 2izrA 330 22.65 1zk7A 467 27.00 3cdlA 203 27.67 2tct 207 28.32 1zpyA 95 29.34 a.25.1.5 125479 1r03A 182 30.98 a.25.1.1 104675 1khvA 516 32.41 e.8.1.4 68627 2qorA 204 32.62 2fkzA 155 32.89 a.25.1.1 133688 1at3A 247 33.29 b.57.1.1 27021 1rh5C 53 33.48 f.23.29.1 97466 2qf9A 179 33.61 1sxvA 172 34.47 1j30A 144 37.00 a.25.1.1 90806 1lkoA 191 37.31 a.25.1.1,g.41.5.1 78063,78064 1u09A 476 37.78 e.8.1.4 107545 2cihA 183 37.90 2au7A 175 39.16 2ejnA 153 40.37 a.101.1.1,a.101.1.1 132279,132280 1vlgA 176 41.77 a.25.1.1 108816 1ux8A 132 42.25 a.1.1.1 113449 1aquA 297 43.76 c.37.1.5 31942 1lb3A 182 44.21 a.25.1.1 77873 1gntA 553 44.92 e.26.1.1 70290 1zmdA 474 46.73 2aplA 157 47.41 a.258.1.1 127132 2pibA 216 49.96 1wy2A 351 50.34 1d2nA 272 52.03 c.37.1.20 32428 1g3mA 294 52.17 c.37.1.5 83268 3crjA 199 53.04 1te2A 226 53.09 c.108.1.6 106792 2qqyA 149 53.09 1i40A 175 54.76 b.40.5.1 66024 2h4tA 626 55.69 1zrhA 274 56.40 2ntoA 201 57.29 1nn5A 215 58.22 c.37.1.1 85892 2vprA 207 62.55 1xr4A 509 66.64 c.124.1.2,c.124.1.2 115860,115861 2v6vA 156 67.08 2obhA 143 67.46 2nx4A 194 67.53 1y66A 52 68.87 2o8iA 165 69.73 1eumA 165 70.05 a.25.1.1 59507 1kgdA 180 72.44 c.37.1.1 68582 1j93A 353 72.51 c.1.22.1 66454 2doaA 104 72.59 1j99A 293 72.82 c.37.1.5 71618 1iicA 422 74.05 d.108.1.2,d.108.1.2 62422,62423 1rp3A 239 74.57 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 1j77A 209 75.86 a.132.1.2 62674 2gkmA 136 76.73 2pgdA 482 80.83 a.100.1.1,c.2.1.6 18778,30190 1alvA 173 81.73 a.39.1.8 17370 1r8sE 203 82.17 a.118.3.1 97248 3bqpA 80 82.28 2rdpA 150 82.65 1ffyA 917 84.38 a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 2ewfA 610 84.71 1eyhA 144 84.94 a.118.9.1 19214 1fecA 490 85.60 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2infA 359 86.76 3bghA 236 89.61