# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w68A 390 2.15e-32 a.25.1.2 109216 1syyA 346 3.48e-32 a.25.1.2 106126 2rccA 346 5.28e-32 1mxrA 375 6.07e-32 a.25.1.2 85197 1kgnA 329 1.81e-31 a.25.1.2 68584 1jk0B 345 1.07e-29 a.25.1.2 63143 3chhA 336 1.38e-14 2jcdA 345 8.34e-12 1mhyB 395 2.98e-06 a.25.1.2 16781 2inpC 328 1.17e-05 2oc5A 244 3.02e-05 2incA 491 8.32e-05 a.25.1.2 137524 1mtyD 512 0.000106 a.25.1.2 16742 1oq9A 363 0.000162 a.25.1.2 87257 2j2fA 363 0.000163 1mtyB 384 0.000226 a.25.1.2 16740 2uw1A 338 0.000275 2inpA 494 0.000297 2incB 322 0.000439 a.25.1.2 137525 1za0A 275 0.000648 a.25.1.2 124774 1t0qA 498 0.000965 a.25.1.2 106220 1t0qB 330 0.007223 a.25.1.2 106221 2a2mA 258 0.01707 a.132.1.3 126039 1z72A 225 0.01926 a.132.1.3 124583 1otkA 249 0.02449 a.25.1.2 93521 2itbA 206 0.02541 1rtwA 220 0.06792 a.132.1.3 97823 1tyhA 248 0.07232 a.132.1.3 107458 1rcwA 231 0.1030 a.132.1.4 97299 1yakA 263 0.1079 a.132.1.3 122833 2qcxA 263 0.2982 1uddA 226 0.5495 a.132.1.3 107776 3bjdA 332 0.9288 2q4xA 221 1.043 a.132.1.3 139880 1o9iA 266 1.717 a.25.1.3 92671 1otvA 259 1.758 a.132.1.4 93526 1f7uA 607 3.204 a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 2cwlA 302 4.146 a.25.1.3 130927 2qzcA 214 4.455 2v8tA 302 5.043 2f2gA 221 5.970 a.132.1.3 132816 1hu3A 260 10.48 a.118.1.14 19137 1uw0A 117 12.26 g.39.1.12 108063 2tct 207 19.18 3b5oA 244 19.48 1wovA 250 21.45 a.132.1.1 121124 2qf9A 179 25.63 2qorA 204 25.96 3cnhA 200 26.31 1d2nA 272 26.45 c.37.1.20 32428 2izrA 330 27.59 1fx7A 230 28.14 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1qq5A 253 28.50 c.108.1.1 43327 1yuzA 202 31.39 a.25.1.1,g.41.5.1 124077,124078 1khvA 516 32.43 e.8.1.4 68627 2ntoA 201 32.53 2ejnA 153 33.22 a.101.1.1,a.101.1.1 132279,132280 1r03A 182 33.91 a.25.1.1 104675 1zpyA 95 35.25 a.25.1.5 125479 2fkzA 155 35.93 a.25.1.1 133688 2cihA 183 36.28 1rh5C 53 37.90 f.23.29.1 97466 1e7uA 961 39.03 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1u09A 476 39.11 e.8.1.4 107545 3cdlA 203 39.30 1zmdA 474 40.06 1zk7A 467 40.54 2pibA 216 44.53 1j93A 353 44.88 c.1.22.1 66454 1xr4A 509 45.17 c.124.1.2,c.124.1.2 115860,115861 1vlgA 176 45.71 a.25.1.1 108816 1j30A 144 46.25 a.25.1.1 90806 1at3A 247 47.01 b.57.1.1 27021 1sxvA 172 47.06 1lb3A 182 47.46 a.25.1.1 77873 1ux8A 132 49.78 a.1.1.1 113449 2aplA 157 50.43 a.258.1.1 127132 1aquA 297 52.03 c.37.1.5 31942 2v6vA 156 52.39 2o8iA 165 52.56 3crjA 199 54.29 2vprA 207 54.32 1iicA 422 54.86 d.108.1.2,d.108.1.2 62422,62423 1nn5A 215 56.53 c.37.1.1 85892 2au7A 175 57.23 1g3mA 294 58.02 c.37.1.5 83268 1lkoA 191 62.80 a.25.1.1,g.41.5.1 78063,78064 1te2A 226 62.90 c.108.1.6 106792 1gntA 553 63.14 e.26.1.1 70290 2h4tA 626 63.90 1zrhA 274 63.96 1wy2A 351 65.83 2obhA 143 66.60 1rp3A 239 67.34 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 2pgdA 482 68.56 a.100.1.1,c.2.1.6 18778,30190 1i40A 175 70.37 b.40.5.1 66024 2doaA 104 72.31 2nx4A 194 72.97 2pvqA 201 73.45 2qqyA 149 74.20 1fecA 490 74.70 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1y66A 52 74.97 1j99A 293 75.31 c.37.1.5 71618 1wn1A 356 76.77 1knzA 164 78.25 e.34.1.1 68709 1alvA 173 80.32 a.39.1.8 17370 3bghA 236 83.49 2di4A 238 86.05 a.269.1.1 131522 2infA 359 86.22 1ffyA 917 86.75 a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 2fzfA 175 87.38 a.25.1.1 134437 2yqzA 263 88.91