# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w68A 390 2.20e-39 a.25.1.2 109216 1syyA 346 2.38e-38 a.25.1.2 106126 2rccA 346 2.54e-38 1mxrA 375 1.39e-37 a.25.1.2 85197 1kgnA 329 2.17e-37 a.25.1.2 68584 1jk0B 345 1.53e-34 a.25.1.2 63143 3chhA 336 2.46e-15 2jcdA 345 6.92e-12 2inpC 328 3.13e-08 1mhyB 395 2.14e-07 a.25.1.2 16781 2oc5A 244 3.05e-06 1mtyB 384 1.46e-05 a.25.1.2 16740 2incB 322 1.56e-05 a.25.1.2 137525 1t0qB 330 0.000119 a.25.1.2 106221 1za0A 275 0.000353 a.25.1.2 124774 2inpA 494 0.000373 2a2mA 258 0.000778 a.132.1.3 126039 1oq9A 363 0.000856 a.25.1.2 87257 1mtyD 512 0.001079 a.25.1.2 16742 2incA 491 0.001321 a.25.1.2 137524 2j2fA 363 0.001395 2uw1A 338 0.001633 1rcwA 231 0.005538 a.132.1.4 97299 1t0qA 498 0.008832 a.25.1.2 106220 2itbA 206 0.009040 1z72A 225 0.01317 a.132.1.3 124583 1tyhA 248 0.06272 a.132.1.3 107458 1uddA 226 0.06486 a.132.1.3 107776 1yakA 263 0.08072 a.132.1.3 122833 2qzcA 214 0.1029 1rtwA 220 0.2113 a.132.1.3 97823 2q4xA 221 0.2436 a.132.1.3 139880 2qcxA 263 0.2544 1otkA 249 0.3079 a.25.1.2 93521 1o9iA 266 2.170 a.25.1.3 92671 2f2gA 221 2.931 a.132.1.3 132816 1otvA 259 3.858 a.132.1.4 93526 3b5oA 244 6.077 3cnhA 200 7.062 1jnyA 435 12.62 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1j93A 353 13.16 c.1.22.1 66454 1yuzA 202 14.07 a.25.1.1,g.41.5.1 124077,124078 2aplA 157 15.86 a.258.1.1 127132 2h4tA 626 16.88 1rhcA 330 17.01 c.1.16.3 97468 1lucB 324 17.56 c.1.16.1 29548 2infA 359 18.36 2v8tA 302 21.45 1jpkA 388 22.22 c.1.22.1 67026 1uw0A 117 23.43 g.39.1.12 108063 2ex0A 399 23.62 c.87.1.9 132494 1r3sA 367 24.31 c.1.22.1 96963 1jh6A 189 25.12 d.61.1.1 66707 1j6wA 175 25.88 d.185.1.2 62663 2cwlA 302 29.52 a.25.1.3 130927 2oq2A 261 35.64 3bjdA 332 35.89 1zuwA 272 38.61 1f7uA 607 38.67 a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 3bqpA 80 42.91 1eumA 165 44.55 a.25.1.1 59507 1bupA 386 44.64 c.55.1.1,c.55.1.1 33377,33378 1wovA 250 44.65 a.132.1.1 121124 2zcoA 293 45.87 2debA 653 46.52 1l9lA 74 51.40 a.64.1.1 77827 1wwmA 190 51.78 a.132.1.3 121363 1j77A 209 52.17 a.132.1.2 62674 2iyvA 184 52.45 c.37.1.2 137812 1qq5A 253 54.22 c.108.1.1 43327 1euhA 475 57.47 c.82.1.1 35369 1sxvA 172 58.81 1ynpA 317 58.92 1u09A 476 59.57 e.8.1.4 107545 2d1eA 248 60.43 1qd1A 325 61.85 d.58.34.1,d.58.34.1 39493,39494 1r03A 182 62.55 a.25.1.1 104675 2h5nA 133 62.94 1qu1A 155 63.49 h.3.1.1 45670 2faoA 309 64.55 1s3qA 173 64.72 a.25.1.1 118848 1o04A 500 65.03 c.82.1.1 86508 1vlgA 176 66.71 a.25.1.1 108816 2o38A 120 66.94 1wzdA 215 68.94 a.132.1.1 121493 1qe5A 266 69.50 c.56.2.1 33784 1khvA 516 69.53 e.8.1.4 68627 2czlA 272 77.41 c.94.1.1 131055 1p1xA 260 80.46 c.1.10.1 104060 1ydnA 295 80.81 2vfrA 422 81.49 1xl7A 612 82.31 c.43.1.3,c.43.1.3 115438,115439 1nn5A 215 82.38 c.37.1.1 85892 1wndA 495 84.23 c.82.1.1 114751 2zd1A 557 85.16 1ajoA 214 85.55 b.29.1.2 24179 2qtpA 194 86.66 1lucA 355 88.14 c.1.16.1 29547