# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w68A 390 9.94e-38 a.25.1.2 109216 2rccA 346 7.84e-37 1syyA 346 1.07e-36 a.25.1.2 106126 1mxrA 375 1.36e-36 a.25.1.2 85197 1kgnA 329 6.78e-36 a.25.1.2 68584 1jk0B 345 1.20e-33 a.25.1.2 63143 3chhA 336 9.76e-17 2jcdA 345 3.57e-13 1mhyB 395 2.72e-07 a.25.1.2 16781 2inpC 328 8.49e-07 1mtyD 512 7.82e-06 a.25.1.2 16742 2oc5A 244 9.36e-06 2incA 491 1.43e-05 a.25.1.2 137524 1mtyB 384 1.51e-05 a.25.1.2 16740 2j2fA 363 2.93e-05 1oq9A 363 3.29e-05 a.25.1.2 87257 2uw1A 338 4.43e-05 2incB 322 4.99e-05 a.25.1.2 137525 1za0A 275 0.000102 a.25.1.2 124774 2inpA 494 0.000132 1t0qA 498 0.000263 a.25.1.2 106220 1t0qB 330 0.000649 a.25.1.2 106221 1otkA 249 0.007140 a.25.1.2 93521 1z72A 225 0.007645 a.132.1.3 124583 1rtwA 220 0.03394 a.132.1.3 97823 2a2mA 258 0.03789 a.132.1.3 126039 2itbA 206 0.04555 1tyhA 248 0.06479 a.132.1.3 107458 1rcwA 231 0.06517 a.132.1.4 97299 1yakA 263 0.1476 a.132.1.3 122833 2qcxA 263 0.3545 3bjdA 332 0.3552 1uddA 226 0.3655 a.132.1.3 107776 2q4xA 221 0.4439 a.132.1.3 139880 2qzcA 214 1.804 1o9iA 266 2.294 a.25.1.3 92671 1f7uA 607 2.327 a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1otvA 259 2.599 a.132.1.4 93526 2cwlA 302 4.898 a.25.1.3 130927 2f2gA 221 7.186 a.132.1.3 132816 1zmdA 474 8.536 2fkzA 155 10.70 a.25.1.1 133688 1yuzA 202 11.39 a.25.1.1,g.41.5.1 124077,124078 2izrA 330 12.21 2v8tA 302 12.28 1uw0A 117 12.94 g.39.1.12 108063 1wovA 250 13.52 a.132.1.1 121124 2ps5A 374 14.35 1knzA 164 15.73 e.34.1.1 68709 2o8iA 165 16.77 1fx7A 230 17.01 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1j30A 144 18.39 a.25.1.1 90806 3b5oA 244 18.59 1wwmA 190 18.63 a.132.1.3 121363 1nn5A 215 19.22 c.37.1.1 85892 1rh5C 53 20.46 f.23.29.1 97466 2aplA 157 20.52 a.258.1.1 127132 1hu3A 260 22.72 a.118.1.14 19137 1j93A 353 23.03 c.1.22.1 66454 1u09A 476 25.34 e.8.1.4 107545 2o3lA 85 26.81 1e7uA 961 28.71 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1gntA 553 28.83 e.26.1.1 70290 1zk7A 467 29.19 1ffyA 917 31.61 a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 2ejnA 153 32.64 a.101.1.1,a.101.1.1 132279,132280 1zpyA 95 34.19 a.25.1.5 125479 1aquA 297 37.51 c.37.1.5 31942 3cdlA 203 38.68 1qq5A 253 40.26 c.108.1.1 43327 1khvA 516 40.33 e.8.1.4 68627 2obhA 143 40.68 2h4tA 626 42.48 1rp3A 239 42.94 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 1zrhA 274 43.27 1ggzA 148 44.03 a.39.1.5 70176 1g3mA 294 44.11 c.37.1.5 83268 1lkoA 191 44.58 a.25.1.1,g.41.5.1 78063,78064 1azsC 388 44.83 a.66.1.1,c.37.1.8 18203,32086 1j99A 293 45.87 c.37.1.5 71618 1fecA 490 48.92 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1eumA 165 50.15 a.25.1.1 59507 1wy2A 351 50.35 1ux8A 132 50.94 a.1.1.1 113449 1vlgA 176 52.48 a.25.1.1 108816 2ewfA 610 54.64 2v6vA 156 55.48 2dpmA 284 56.22 c.66.1.28 34246 2ex0A 399 56.52 c.87.1.9 132494 1j77A 209 56.94 a.132.1.2 62674 2bsqE 77 58.86 a.43.1.8 129102 1zkrA 153 59.36 a.101.1.1,a.101.1.1 125209,125210 2axqA 467 59.40 2tct 207 60.15 1krqA 167 61.09 a.25.1.1 68855 1iicA 422 61.17 d.108.1.2,d.108.1.2 62422,62423 1qd1A 325 62.46 d.58.34.1,d.58.34.1 39493,39494 1s3qA 173 62.48 a.25.1.1 118848 2q52A 224 65.28 2qorA 204 65.63 2qghA 425 66.41 2infA 359 67.81 1gx1A 160 69.83 d.79.5.1 70675 1fmjA 351 74.14 c.37.1.5 59879 1topA 162 74.29 a.39.1.5 17223 1t0aA 159 74.83 d.79.5.1 112192 1xr4A 509 75.76 c.124.1.2,c.124.1.2 115860,115861 2jv3A 110 77.94 2o4tA 100 79.52 2qq9A 226 79.56 1mo9A 523 79.80 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 3bqpA 80 81.66 1iv3A 152 81.87 d.79.5.1 76828 1oxkB 134 82.58 c.23.1.1 93691 1zd1A 284 82.61 3cnhA 200 83.39 2ondA 308 87.67 2ogfA 122 89.99