# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w68A 390 3.53e-35 a.25.1.2 109216 2rccA 346 6.79e-35 1mxrA 375 1.64e-34 a.25.1.2 85197 1syyA 346 3.69e-34 a.25.1.2 106126 1kgnA 329 2.38e-33 a.25.1.2 68584 1jk0B 345 3.02e-31 a.25.1.2 63143 3chhA 336 3.74e-15 2jcdA 345 3.36e-12 1mhyB 395 1.37e-06 a.25.1.2 16781 2inpC 328 9.43e-06 2j2fA 363 1.10e-05 2incA 491 2.99e-05 a.25.1.2 137524 2oc5A 244 4.28e-05 1oq9A 363 7.34e-05 a.25.1.2 87257 2uw1A 338 0.000105 1za0A 275 0.000109 a.25.1.2 124774 2incB 322 0.000215 a.25.1.2 137525 1mtyB 384 0.000312 a.25.1.2 16740 2inpA 494 0.000336 1t0qA 498 0.001713 a.25.1.2 106220 1t0qB 330 0.003734 a.25.1.2 106221 1otkA 249 0.01689 a.25.1.2 93521 1mtyD 512 0.02098 a.25.1.2 16742 1z72A 225 0.03240 a.132.1.3 124583 1tyhA 248 0.05798 a.132.1.3 107458 2itbA 206 0.1013 1rtwA 220 0.1391 a.132.1.3 97823 2a2mA 258 0.1988 a.132.1.3 126039 1rcwA 231 0.3107 a.132.1.4 97299 3bjdA 332 0.4838 1yakA 263 0.5131 a.132.1.3 122833 2qcxA 263 0.9549 2q4xA 221 1.261 a.132.1.3 139880 1zu0A 529 1.741 1uddA 226 2.225 a.132.1.3 107776 2fkzA 155 2.754 a.25.1.1 133688 1w36C 1122 2.770 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 2i3fA 224 3.065 2qzcA 214 4.105 1ffyA 917 4.149 a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1otvA 259 5.529 a.132.1.4 93526 2napA 723 5.795 b.52.2.2,c.81.1.1 26926,35334 2cwlA 302 7.065 a.25.1.3 130927 2f2gA 221 7.907 a.132.1.3 132816 1cs0A 1073 8.101 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1e7uA 961 8.188 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1azsC 388 9.074 a.66.1.1,c.37.1.8 18203,32086 1zy9A 564 9.378 b.30.5.11,c.1.8.13 125813,125814 2v8tA 302 9.95 2as0A 396 10.18 b.122.1.9,c.66.1.51 127227,127228 1g7oA 215 10.48 a.45.1.1,c.47.1.5 60332,60333 1f7uA 607 10.95 a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1eumA 165 11.39 a.25.1.1 59507 1e6yB 433 11.77 a.89.1.1,d.58.31.2 18535,39453 1kblA 873 12.06 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1w63A 618 12.84 i.23.1.1 109192 2f2uA 402 15.00 2ptzA 432 15.15 5eauA 548 15.88 a.102.4.1,a.128.1.3 18851,19443 2yzsA 315 16.63 1hnjA 317 16.64 c.95.1.2,c.95.1.2 35969,35970 2pa6A 427 17.65 1wn1A 356 19.63 1yuzA 202 19.77 a.25.1.1,g.41.5.1 124077,124078 2v3vA 723 22.25 2qp2A 511 22.32 2zadA 345 24.05 1wwmA 190 24.62 a.132.1.3 121363 2ps5A 374 24.80 3cdlA 203 25.04 1j30A 144 25.30 a.25.1.1 90806 1oewA 329 26.09 b.50.1.2 86924 1g8kA 825 27.34 b.52.2.2,c.81.1.1 26920,35328 2bv6A 142 27.60 1vlgA 176 27.99 a.25.1.1 108816 1a0dA 440 28.54 c.1.15.3 29533 1hwxA 501 29.11 c.2.1.7,c.58.1.1 30250,33898 1jqoA 970 29.17 c.1.12.3 77160 1ps1A 337 29.23 a.128.1.4 19450 1rhsA 296 30.84 c.46.1.2,c.46.1.2 32703,32704 1lb3A 182 31.60 a.25.1.1 77873 1qo8A 566 33.64 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1a0cA 438 34.44 c.1.15.3 29529 1wovA 250 34.55 a.132.1.1 121124 1q59A 172 35.04 f.1.4.1 95881 1ee4A 423 35.97 a.118.1.1 19128 1g87A 614 36.77 a.102.1.2,b.2.2.2 83275,83276 1krqA 167 37.84 a.25.1.1 68855 1nn5A 215 37.86 c.37.1.1 85892 1gntA 553 38.13 e.26.1.1 70290 2j6aA 141 39.43 1sxvA 172 39.50 2qorA 204 40.91 2di4A 238 41.44 a.269.1.1 131522 1s3qA 173 42.24 a.25.1.1 118848 2au7A 175 42.50 1i40A 175 42.56 b.40.5.1 66024 1r03A 182 42.80 a.25.1.1 104675 2cihA 183 43.79 2gdrA 202 44.44 3b5oA 244 44.77 1lkoA 191 44.86 a.25.1.1,g.41.5.1 78063,78064 2qzuA 491 45.72 1w6tA 444 47.30 c.1.11.1,d.54.1.1 120670,120671 2debA 653 47.89 2hw2A 143 48.21 2aplA 157 48.36 a.258.1.1 127132 2cfuA 658 48.41 1zrhA 274 48.79 1wmwA 330 48.86 1reqB 637 49.14 c.1.19.1,c.23.6.1 29621,31248 2za8A 167 49.57 1topA 162 49.78 a.39.1.5 17223 2j0fA 482 50.57 1ggzA 148 50.74 a.39.1.5 70176 2ff4A 388 51.37 a.4.6.1,a.118.8.3,b.26.1.2 133367,133368,133369 1w0dA 337 51.85 c.77.1.1 114060 1hbnB 442 52.07 a.89.1.1,d.58.31.2 60900,60901 1fx7A 230 52.81 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1d2nA 272 53.11 c.37.1.20 32428 1qq5A 253 53.19 c.108.1.1 43327 2o8iA 165 53.86 2e8vA 340 55.08 1zpyA 95 55.23 a.25.1.5 125479 2bqxA 173 55.47 2nuwA 288 57.01 1ho8A 480 57.27 a.118.1.9 61107 1zd1A 284 57.40 3cblA 377 57.61 2i7qA 402 57.84 2csgA 424 58.06 b.82.2.12 130768 2qqyA 149 58.26 2vprA 207 58.47 1gox 370 60.79 2b78A 385 61.04 b.122.1.9,c.66.1.51 128025,128026 2obhA 143 61.37 1jndA 420 61.66 c.1.8.5,d.26.3.1 71757,71758 2cxaA 256 62.59 d.108.1.6 130993 1j93A 353 63.39 c.1.22.1 66454 1knzA 164 63.54 e.34.1.1 68709 2ie4A 589 63.89 a.118.1.2 137291 1u09A 476 65.38 e.8.1.4 107545 1rh5C 53 65.85 f.23.29.1 97466 1uw0A 117 66.94 g.39.1.12 108063 2o3lA 85 68.78 2qgsA 225 71.69 2pmvA 399 72.36 1wkrA 340 72.45 b.50.1.2 109395 2fuqA 747 72.77 1alvA 173 73.08 a.39.1.8 17370 2q1sA 377 74.10 1o0yA 260 74.46 c.1.10.1 80756 1csh 435 74.69 1aquA 297 75.53 c.37.1.5 31942 2v6vA 156 76.15 2a9gA 418 76.22 d.126.1.4 126435 2e8yA 718 76.25 1jf4A 147 76.62 a.1.1.2 71643 2tct 207 76.64 1lv7A 257 77.29 c.37.1.20 78232 2vobA 652 78.13 2i7vA 459 78.88 1omhA 293 79.72 d.89.1.5 93348 1x38A 602 80.79 c.1.8.7,c.23.11.1 121655,121656 2vccA 891 82.11 1gwuA 309 82.76 a.93.1.1 83351 1j99A 293 82.80 c.37.1.5 71618 2dvzA 314 83.30 1ct9A 553 86.19 c.26.2.1,d.153.1.1 31616,41834 2o8bA 934 87.05 2i57A 438 87.27 1vqrA 297 88.02 a.211.1.3 114015