# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w68A 390 2.52e-38 a.25.1.2 109216 2rccA 346 1.79e-37 1syyA 346 2.51e-37 a.25.1.2 106126 1mxrA 375 3.55e-37 a.25.1.2 85197 1kgnA 329 2.67e-36 a.25.1.2 68584 1jk0B 345 2.26e-34 a.25.1.2 63143 3chhA 336 9.21e-17 2jcdA 345 3.16e-13 1mhyB 395 4.87e-07 a.25.1.2 16781 2inpC 328 5.88e-07 1mtyD 512 7.47e-06 a.25.1.2 16742 2oc5A 244 8.53e-06 2incA 491 1.73e-05 a.25.1.2 137524 2j2fA 363 2.52e-05 1oq9A 363 2.81e-05 a.25.1.2 87257 2uw1A 338 3.38e-05 2incB 322 3.46e-05 a.25.1.2 137525 1mtyB 384 3.50e-05 a.25.1.2 16740 2inpA 494 0.000124 1za0A 275 0.000153 a.25.1.2 124774 1t0qA 498 0.000302 a.25.1.2 106220 1t0qB 330 0.000482 a.25.1.2 106221 1z72A 225 0.006863 a.132.1.3 124583 1otkA 249 0.01074 a.25.1.2 93521 1rtwA 220 0.03087 a.132.1.3 97823 2a2mA 258 0.04132 a.132.1.3 126039 1tyhA 248 0.04612 a.132.1.3 107458 1rcwA 231 0.05677 a.132.1.4 97299 2itbA 206 0.06100 1yakA 263 0.09720 a.132.1.3 122833 2qcxA 263 0.2858 1uddA 226 0.2885 a.132.1.3 107776 2q4xA 221 0.5026 a.132.1.3 139880 3bjdA 332 0.5237 2qzcA 214 1.320 1otvA 259 1.955 a.132.1.4 93526 1o9iA 266 2.094 a.25.1.3 92671 1f7uA 607 2.912 a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 2cwlA 302 5.602 a.25.1.3 130927 2f2gA 221 7.776 a.132.1.3 132816 1zmdA 474 9.217 2izrA 330 10.94 2v8tA 302 11.87 2fkzA 155 12.47 a.25.1.1 133688 1j93A 353 13.61 c.1.22.1 66454 1e7uA 961 13.87 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1knzA 164 14.20 e.34.1.1 68709 1yuzA 202 15.37 a.25.1.1,g.41.5.1 124077,124078 1wwmA 190 15.68 a.132.1.3 121363 1fx7A 230 16.53 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1uw0A 117 16.68 g.39.1.12 108063 1rh5C 53 17.84 f.23.29.1 97466 2aplA 157 18.22 a.258.1.1 127132 3b5oA 244 18.23 2ps5A 374 19.80 1wovA 250 20.43 a.132.1.1 121124 1u09A 476 23.01 e.8.1.4 107545 1j30A 144 23.15 a.25.1.1 90806 1aquA 297 23.55 c.37.1.5 31942 2o8iA 165 24.19 2o3lA 85 24.99 1azsC 388 25.89 a.66.1.1,c.37.1.8 18203,32086 2ejnA 153 26.12 a.101.1.1,a.101.1.1 132279,132280 1nn5A 215 26.82 c.37.1.1 85892 1qq5A 253 26.83 c.108.1.1 43327 1zrhA 274 27.34 1g3mA 294 29.46 c.37.1.5 83268 1hu3A 260 30.63 a.118.1.14 19137 1khvA 516 31.32 e.8.1.4 68627 1gntA 553 33.24 e.26.1.1 70290 1zk7A 467 34.07 1zpyA 95 34.93 a.25.1.5 125479 1vlgA 176 35.65 a.25.1.1 108816 1eumA 165 37.08 a.25.1.1 59507 2infA 359 39.13 1rp3A 239 41.35 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 1krqA 167 41.82 a.25.1.1 68855 2axqA 467 42.03 1zkrA 153 42.11 a.101.1.1,a.101.1.1 125209,125210 2b1pA 355 44.87 d.144.1.7 127672 1s3qA 173 46.73 a.25.1.1 118848 2h4tA 626 47.06 1ffyA 917 48.36 a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 3bqpA 80 49.39 2qghA 425 51.86 1iicA 422 55.44 d.108.1.2,d.108.1.2 62422,62423 2ewfA 610 56.71 1sxvA 172 57.04 1j99A 293 59.48 c.37.1.5 71618 1xr4A 509 61.22 c.124.1.2,c.124.1.2 115860,115861 2o4tA 100 61.99 1wy2A 351 62.00 1m85A 484 64.27 e.5.1.1 74578 3cnhA 200 65.07 3cdlA 203 65.83 2qorA 204 67.29 1ls6A 295 68.80 c.37.1.5 91115 1ggzA 148 69.05 a.39.1.5 70176 1mo9A 523 70.14 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 2tct 207 71.03 2obhA 143 71.31 2q52A 224 72.29 2qqyA 149 72.31 2dpmA 284 72.61 c.66.1.28 34246 1j77A 209 72.67 a.132.1.2 62674 1y66A 52 74.18 2v6vA 156 76.88 2ex0A 399 77.32 c.87.1.9 132494 2qq9A 226 82.03 1qd1A 325 83.14 d.58.34.1,d.58.34.1 39493,39494 2bsqE 77 83.34 a.43.1.8 129102 1oxkB 134 83.87 c.23.1.1 93691 1lkoA 191 84.00 a.25.1.1,g.41.5.1 78063,78064 1fecA 490 85.95 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2i3fA 224 87.94 1ux8A 132 89.19 a.1.1.1 113449 2rfpA 171 89.67