# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w68A 390 4.24e-39 a.25.1.2 109216 2rccA 346 1.27e-38 1mxrA 375 1.82e-38 a.25.1.2 85197 1syyA 346 2.03e-38 a.25.1.2 106126 1kgnA 329 1.81e-37 a.25.1.2 68584 1jk0B 345 3.69e-35 a.25.1.2 63143 3chhA 336 4.33e-17 2jcdA 345 2.79e-13 1mhyB 395 7.33e-08 a.25.1.2 16781 2inpC 328 2.34e-07 2incA 491 2.84e-06 a.25.1.2 137524 1mtyD 512 5.05e-06 a.25.1.2 16742 1mtyB 384 6.99e-06 a.25.1.2 16740 1oq9A 363 1.31e-05 a.25.1.2 87257 1t0qA 498 1.61e-05 a.25.1.2 106220 2oc5A 244 1.64e-05 2j2fA 363 1.98e-05 2incB 322 2.25e-05 a.25.1.2 137525 2uw1A 338 3.93e-05 2inpA 494 0.000186 1za0A 275 0.000281 a.25.1.2 124774 1t0qB 330 0.000705 a.25.1.2 106221 1otkA 249 0.008771 a.25.1.2 93521 2a2mA 258 0.01604 a.132.1.3 126039 1z72A 225 0.01696 a.132.1.3 124583 1tyhA 248 0.02989 a.132.1.3 107458 1yakA 263 0.04590 a.132.1.3 122833 1rtwA 220 0.06298 a.132.1.3 97823 2itbA 206 0.1669 2qcxA 263 0.1678 1rcwA 231 0.2298 a.132.1.4 97299 1uddA 226 0.3933 a.132.1.3 107776 2q4xA 221 0.6434 a.132.1.3 139880 3bjdA 332 0.9748 1otvA 259 3.717 a.132.1.4 93526 2qzcA 214 3.877 1o9iA 266 4.710 a.25.1.3 92671 1f7uA 607 6.867 a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1wovA 250 8.458 a.132.1.1 121124 1ffyA 917 9.862 a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1e7uA 961 10.17 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 2cwlA 302 10.99 a.25.1.3 130927 1uw0A 117 11.73 g.39.1.12 108063 2f2gA 221 14.27 a.132.1.3 132816 3bqpA 80 15.41 1qq5A 253 15.48 c.108.1.1 43327 3cnhA 200 18.20 1fx7A 230 21.95 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2izrA 330 24.76 2tct 207 29.90 2qf9A 179 30.58 2pkeA 251 31.55 2v8tA 302 31.97 1rh5C 53 33.98 f.23.29.1 97466 2fkzA 155 35.13 a.25.1.1 133688 1zmdA 474 35.30 2b1pA 355 35.77 d.144.1.7 127672 2j69A 695 36.14 2napA 723 36.42 b.52.2.2,c.81.1.1 26926,35334 1zrhA 274 36.44 2ondA 308 37.75 2qypA 91 39.05 3b5oA 244 41.96 1eumA 165 42.34 a.25.1.1 59507 1khvA 516 43.16 e.8.1.4 68627 2i3fA 224 44.67 2v6vA 156 44.85 2qqyA 149 45.97 2pexA 153 46.99 1m12A 84 47.75 a.64.1.1 84745 2o8iA 165 48.88 2jnsA 90 49.15 2v3vA 723 52.63 1azsC 388 53.05 a.66.1.1,c.37.1.8 18203,32086 1nn5A 215 54.26 c.37.1.1 85892 2e8vA 340 54.39 3cdlA 203 55.10 2j5bA 348 57.46 2g09A 297 57.67 1zrnA 232 58.71 c.108.1.1 43323 1wmwA 330 61.52 2bsqE 77 62.59 a.43.1.8 129102 1j99A 293 62.79 c.37.1.5 71618 1vlgA 176 63.99 a.25.1.1 108816 1zk7A 467 65.21 1fecA 490 67.37 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1q4gA 553 70.65 a.93.1.2,g.3.11.1 95789,95790 1aquA 297 70.67 c.37.1.5 31942 2obhA 143 71.80 2doaA 104 71.90 1kshA 186 72.23 c.37.1.8 72914 1gntA 553 72.94 e.26.1.1 70290 1iicA 422 73.00 d.108.1.2,d.108.1.2 62422,62423 1u67A 600 74.25 a.93.1.2,g.3.11.1 107697,107698 2ejaA 338 76.57 2h5nA 133 79.98 2r5rA 271 80.42 2di4A 238 81.84 a.269.1.1 131522 1y66A 52 81.97 1yuzA 202 83.20 a.25.1.1,g.41.5.1 124077,124078 1te2A 226 84.19 c.108.1.6 106792 1oxkB 134 85.95 c.23.1.1 93691 2aplA 157 87.03 a.258.1.1 127132 1j30A 144 87.92 a.25.1.1 90806 1sg6A 393 88.42 e.22.1.1 105522