# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w68A 390 7.44e-38 a.25.1.2 109216 1syyA 346 2.95e-37 a.25.1.2 106126 1mxrA 375 4.79e-37 a.25.1.2 85197 2rccA 346 5.42e-37 1kgnA 329 4.40e-36 a.25.1.2 68584 1jk0B 345 4.11e-34 a.25.1.2 63143 3chhA 336 1.65e-16 2jcdA 345 5.64e-13 1mhyB 395 5.78e-08 a.25.1.2 16781 2inpC 328 1.65e-07 2incA 491 1.14e-06 a.25.1.2 137524 1mtyD 512 1.59e-06 a.25.1.2 16742 1mtyB 384 4.29e-06 a.25.1.2 16740 2oc5A 244 5.52e-06 1t0qA 498 8.56e-06 a.25.1.2 106220 2incB 322 1.03e-05 a.25.1.2 137525 2j2fA 363 3.45e-05 1oq9A 363 3.46e-05 a.25.1.2 87257 2inpA 494 6.59e-05 2uw1A 338 9.17e-05 1t0qB 330 0.000161 a.25.1.2 106221 1za0A 275 0.000594 a.25.1.2 124774 2a2mA 258 0.01146 a.132.1.3 126039 1z72A 225 0.01356 a.132.1.3 124583 1otkA 249 0.01506 a.25.1.2 93521 1tyhA 248 0.02541 a.132.1.3 107458 1rtwA 220 0.05049 a.132.1.3 97823 1yakA 263 0.07088 a.132.1.3 122833 2qcxA 263 0.1194 2itbA 206 0.1391 1rcwA 231 0.1449 a.132.1.4 97299 2q4xA 221 0.3564 a.132.1.3 139880 1otvA 259 0.3870 a.132.1.4 93526 1uddA 226 0.4429 a.132.1.3 107776 3bjdA 332 0.5261 1o9iA 266 1.527 a.25.1.3 92671 1f7uA 607 2.068 a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1wovA 250 2.073 a.132.1.1 121124 2qzcA 214 4.117 2cwlA 302 5.680 a.25.1.3 130927 1ffyA 917 6.459 a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 2f2gA 221 7.559 a.132.1.3 132816 2v8tA 302 10.44 1fx7A 230 10.61 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1rh5C 53 14.88 f.23.29.1 97466 1e7uA 961 16.29 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 3bqpA 80 16.74 1zmdA 474 17.72 2izrA 330 20.20 1uw0A 117 20.35 g.39.1.12 108063 1zrhA 274 21.73 3cdlA 203 22.86 1azsC 388 25.93 a.66.1.1,c.37.1.8 18203,32086 1nn5A 215 27.76 c.37.1.1 85892 1qq5A 253 29.36 c.108.1.1 43327 1hu3A 260 30.57 a.118.1.14 19137 3cnhA 200 30.59 1aquA 297 32.04 c.37.1.5 31942 1t8tA 271 32.10 c.37.1.5 106685 1m12A 84 34.32 a.64.1.1 84745 3b5oA 244 34.39 2jnsA 90 37.84 2p1jA 186 38.50 1g7oA 215 39.36 a.45.1.1,c.47.1.5 60332,60333 2r5rA 271 40.04 2ejnA 153 40.10 a.101.1.1,a.101.1.1 132279,132280 1g3mA 294 42.57 c.37.1.5 83268 1eumA 165 43.54 a.25.1.1 59507 2q1sA 377 43.66 1j99A 293 45.24 c.37.1.5 71618 2e8vA 340 46.03 1wy2A 351 46.18 1fmjA 351 47.29 c.37.1.5 59879 2fkzA 155 47.31 a.25.1.1 133688 1zk7A 467 47.36 2bsqE 77 47.61 a.43.1.8 129102 1j93A 353 47.63 c.1.22.1 66454 2aplA 157 48.67 a.258.1.1 127132 2dobA 83 49.03 1zrnA 232 49.15 c.108.1.1 43323 1r8sE 203 50.34 a.118.3.1 97248 2v6vA 156 51.02 1iicA 422 52.14 d.108.1.2,d.108.1.2 62422,62423 1y66A 52 52.62 2o3lA 85 52.88 1krqA 167 53.11 a.25.1.1 68855 2qf9A 179 54.90 1xszA 356 55.10 a.118.3.1,d.129.9.1 116005,116006 2h5nA 133 55.34 1fecA 490 55.65 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2gwhA 298 56.18 2pkeA 251 56.87 1u09A 476 56.94 e.8.1.4 107545 2j69A 695 58.22 2qypA 91 58.40 2axqA 467 59.85 1zpyA 95 60.56 a.25.1.5 125479 1i40A 175 62.76 b.40.5.1 66024 2o0mA 345 63.43 1wn1A 356 63.89 1vlgA 176 64.22 a.25.1.1 108816 2d5vA 164 64.22 1sxvA 172 65.89 2au7A 175 66.50 1te2A 226 67.15 c.108.1.6 106792 2doaA 104 69.27 2obhA 143 70.75 2o8iA 165 70.98 1rhcA 330 73.90 c.1.16.3 97468 2pexA 153 74.51 1zd1A 284 75.19 1xr4A 509 75.70 c.124.1.2,c.124.1.2 115860,115861 1yuzA 202 77.24 a.25.1.1,g.41.5.1 124077,124078 2nn6H 308 77.50 1mo9A 523 78.53 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1ux8A 132 80.79 a.1.1.1 113449 3cklA 298 80.99 1khvA 516 81.60 e.8.1.4 68627 2b1pA 355 82.34 d.144.1.7 127672 2infA 359 82.78 1zkrA 153 84.34 a.101.1.1,a.101.1.1 125209,125210 2di4A 238 84.41 a.269.1.1 131522 1alvA 173 85.37 a.39.1.8 17370 3bfxA 296 87.23 1ls6A 295 87.53 c.37.1.5 91115 2h5gA 463 89.33