# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w68A 390 6.13e-54 a.25.1.2 109216 1syyA 346 3.30e-53 a.25.1.2 106126 1mxrA 375 4.04e-52 a.25.1.2 85197 2rccA 346 8.91e-52 1kgnA 329 1.46e-51 a.25.1.2 68584 1jk0B 345 1.23e-47 a.25.1.2 63143 3chhA 336 2.05e-21 2jcdA 345 3.45e-17 2inpC 328 3.99e-11 1mhyB 395 4.81e-10 a.25.1.2 16781 2incB 322 1.25e-08 a.25.1.2 137525 1t0qB 330 6.98e-08 a.25.1.2 106221 1mtyB 384 4.01e-07 a.25.1.2 16740 2oc5A 244 1.30e-06 1oq9A 363 6.40e-06 a.25.1.2 87257 2uw1A 338 9.72e-06 2j2fA 363 3.35e-05 1za0A 275 7.65e-05 a.25.1.2 124774 1mtyD 512 0.000125 a.25.1.2 16742 2incA 491 0.000558 a.25.1.2 137524 2inpA 494 0.000920 2a2mA 258 0.001021 a.132.1.3 126039 1z72A 225 0.003009 a.132.1.3 124583 1otkA 249 0.005025 a.25.1.2 93521 1t0qA 498 0.01861 a.25.1.2 106220 2itbA 206 0.07265 1yakA 263 0.1616 a.132.1.3 122833 1tyhA 248 0.1970 a.132.1.3 107458 1rcwA 231 0.2256 a.132.1.4 97299 1rtwA 220 0.2610 a.132.1.3 97823 1uddA 226 0.3952 a.132.1.3 107776 2q4xA 221 0.4544 a.132.1.3 139880 1otvA 259 0.5097 a.132.1.4 93526 2bfwA 200 0.5307 c.87.1.8 128456 2qzcA 214 0.8999 2f2gA 221 1.999 a.132.1.3 132816 2qcxA 263 2.120 2h4tA 626 2.565 1yuzA 202 2.913 a.25.1.1,g.41.5.1 124077,124078 1qq5A 253 5.790 c.108.1.1 43327 3cnhA 200 6.205 1jogA 146 11.94 a.24.16.2 77142 1nu7D 282 13.26 a.8.6.1,a.8.6.1 92191,92192 2bmaA 470 14.80 2ex0A 399 17.94 c.87.1.9 132494 1jnyA 435 18.31 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1t8tA 271 20.63 c.37.1.5 106685 2gwhA 298 24.02 1zrhA 274 25.32 2debA 653 25.89 1xnfA 275 28.51 a.118.8.1 115580 1t3tA 1303 32.89 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 2v95A 371 32.93 1eumA 165 33.45 a.25.1.1 59507 3bjdA 332 33.91 1b3bA 415 35.09 c.2.1.7,c.58.1.1 30244,33892 1te2A 226 36.41 c.108.1.6 106792 1u7eB 154 37.25 2j6aA 141 37.32 2cbyA 208 37.41 c.14.1.1 130202 1khvA 516 37.55 e.8.1.4 68627 1g3mA 294 38.03 c.37.1.5 83268 1iicA 422 38.08 d.108.1.2,d.108.1.2 62422,62423 1b26A 416 38.70 c.2.1.7,c.58.1.1 30232,33880 1thg 544 41.17 1tiwA 602 41.49 a.176.1.1,c.1.23.2 112430,112431 1nn5A 215 43.33 c.37.1.1 85892 1cpnA 208 44.18 b.29.1.2 24175 2nyvA 222 44.25 2vg0A 227 45.69 2p4qA 497 45.96 2ondA 308 46.31 1rzuA 485 46.82 c.87.1.8 105140 1wovA 250 47.77 a.132.1.1 121124 1yhtA 367 48.96 c.1.8.6 123213 2i2wA 212 50.35 1wtaA 275 50.85 3b5oA 244 51.02 1y1nA 291 51.66 2gdqA 382 52.75 c.1.11.2,d.54.1.1 135020,135021 2i3fA 224 52.82 3bqpA 80 53.23 2g09A 297 55.50 2pkeA 251 59.89 1y7oA 218 59.92 c.14.1.1 122701 2ewcA 126 60.31 d.79.1.1 132454 2vouA 397 62.26 3be7A 408 62.32 1ls6A 295 62.61 c.37.1.5 91115 1gntA 553 67.05 e.26.1.1 70290 2ffmA 91 68.28 d.267.1.1 133389 1p1xA 260 69.06 c.1.10.1 104060 2cwlA 302 69.85 a.25.1.3 130927 1o04A 500 70.20 c.82.1.1 86508 1inp 400 70.80 1zrnA 232 70.95 c.108.1.1 43323 1h54A 754 72.16 a.102.1.4,b.30.5.3 60634,60635 2oq2A 261 72.46 1nh1A 330 73.09 e.45.1.1 91871 1j77A 209 73.45 a.132.1.2 62674 1io7A 368 73.51 a.104.1.1 18971 1uw0A 117 77.33 g.39.1.12 108063 1yfsA 465 77.62 a.203.1.1,d.104.1.1 123088,123089 1bgvA 449 78.80 c.2.1.7,c.58.1.1 30217,33865 1tvxA 75 79.11 d.9.1.1 37441 1wloA 136 79.77 2e8vA 340 80.61 2efeA 267 82.13 1ymtA 246 82.53 2fkzA 155 83.77 a.25.1.1 133688 1ajoA 214 85.18 b.29.1.2 24179