# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w68A 390 1.04e-45 a.25.1.2 109216 1syyA 346 1.35e-45 a.25.1.2 106126 1mxrA 375 1.36e-44 a.25.1.2 85197 2rccA 346 2.06e-44 1kgnA 329 3.31e-44 a.25.1.2 68584 1jk0B 345 1.80e-41 a.25.1.2 63143 3chhA 336 4.29e-19 2jcdA 345 6.25e-15 2inpC 328 1.53e-08 1mhyB 395 2.38e-08 a.25.1.2 16781 2oc5A 244 3.95e-06 2incB 322 6.82e-06 a.25.1.2 137525 1mtyB 384 3.26e-05 a.25.1.2 16740 1za0A 275 7.84e-05 a.25.1.2 124774 1t0qB 330 9.88e-05 a.25.1.2 106221 1oq9A 363 0.000205 a.25.1.2 87257 2inpA 494 0.000260 2incA 491 0.000550 a.25.1.2 137524 2uw1A 338 0.000553 2j2fA 363 0.000838 1mtyD 512 0.002561 a.25.1.2 16742 2a2mA 258 0.002694 a.132.1.3 126039 1t0qA 498 0.006109 a.25.1.2 106220 1z72A 225 0.009489 a.132.1.3 124583 1rtwA 220 0.04566 a.132.1.3 97823 1tyhA 248 0.07765 a.132.1.3 107458 1rcwA 231 0.08539 a.132.1.4 97299 1uddA 226 0.1221 a.132.1.3 107776 2itbA 206 0.1712 1otvA 259 0.3373 a.132.1.4 93526 1yakA 263 0.3738 a.132.1.3 122833 2qcxA 263 0.5407 1otkA 249 0.8672 a.25.1.2 93521 2q4xA 221 0.9100 a.132.1.3 139880 2qzcA 214 3.241 1f7uA 607 4.255 a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 3bqpA 80 4.330 3b5oA 244 6.403 3cnhA 200 6.590 1qq5A 253 8.447 c.108.1.1 43327 1o9iA 266 10.06 a.25.1.3 92671 1y7oA 218 10.79 c.14.1.1 122701 2cbyA 208 11.15 c.14.1.1 130202 2f2gA 221 12.08 a.132.1.3 132816 1zrhA 274 12.37 3bjdA 332 13.83 2ex0A 399 17.26 c.87.1.9 132494 2bfwA 200 18.41 c.87.1.8 128456 1cb0A 283 22.29 c.56.2.1 33790 1jnyA 435 22.99 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1t8tA 271 23.05 c.37.1.5 106685 1xnzA 264 23.67 d.127.1.1 115673 1khvA 516 24.75 e.8.1.4 68627 1e7uA 961 26.37 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 2iyvA 184 26.41 c.37.1.2 137812 2zcoA 293 26.99 2nyvA 222 27.61 2zl4A 196 28.16 1nn5A 215 32.81 c.37.1.1 85892 2fzsA 193 33.67 c.14.1.1 134462 1yuzA 202 34.58 a.25.1.1,g.41.5.1 124077,124078 2jonA 101 34.68 1m12A 84 35.31 a.64.1.1 84745 2h5nA 133 37.28 1xr4A 509 38.81 c.124.1.2,c.124.1.2 115860,115861 1w63A 618 39.17 i.23.1.1 109192 2d1eA 248 39.47 2ondA 308 39.56 1t3tA 1303 42.89 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1xnfA 275 43.58 a.118.8.1 115580 1qe5A 266 45.38 c.56.2.1 33784 1l9lA 74 46.13 a.64.1.1 77827 2fug7 129 49.16 1thtA 305 51.50 c.69.1.13 34711 2jnsA 90 55.28 1y1nA 291 55.38 2hngA 127 56.94 1j77A 209 57.89 a.132.1.2 62674 1rhcA 330 58.71 c.1.16.3 97468 1fx7A 230 60.31 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1wtaA 275 60.51 1yozA 116 64.25 a.253.1.1 123796 1r3sA 367 66.70 c.1.22.1 96963 2ejaA 338 67.75 2dobA 83 69.92 1ux8A 132 70.84 a.1.1.1 113449 2v8tA 302 71.39 1jpkA 388 71.93 c.1.22.1 67026 2cwlA 302 72.19 a.25.1.3 130927 1ffyA 917 73.10 a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 2pgd 482 73.23 2b1pA 355 75.54 d.144.1.7 127672 1u09A 476 77.90 e.8.1.4 107545 1ciyA 590 78.34 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1zrnA 232 79.52 c.108.1.1 43323 1ytlA 174 80.79 c.31.1.6 124008 1qlpA 394 82.66 e.1.1.1 42628 2ggcA 263 83.32 d.127.1.1 135127 1azsC 388 85.24 a.66.1.1,c.37.1.8 18203,32086 2vg0A 227 85.88