# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mxrA 375 2.61e-20 a.25.1.2 85197 1w68A 390 3.60e-20 a.25.1.2 109216 2rccA 346 1.08e-19 1kgnA 329 2.96e-19 a.25.1.2 68584 1syyA 346 2.44e-18 a.25.1.2 106126 1jk0B 345 6.67e-16 a.25.1.2 63143 3chhA 336 4.12e-05 2jcdA 345 0.000143 2inpC 328 0.000823 1mhyB 395 0.000941 a.25.1.2 16781 1mtyB 384 0.007176 a.25.1.2 16740 2oc5A 244 0.01999 1rcwA 231 0.02351 a.132.1.4 97299 1t0qB 330 0.02628 a.25.1.2 106221 2incB 322 0.07551 a.25.1.2 137525 2a2mA 258 0.1936 a.132.1.3 126039 1za0A 275 0.3894 a.25.1.2 124774 2incA 491 0.4608 a.25.1.2 137524 1t0qA 498 0.9475 a.25.1.2 106220 2qzcA 214 1.998 1mtyD 512 2.160 a.25.1.2 16742 1z72A 225 2.783 a.132.1.3 124583 3b5oA 244 2.885 1uddA 226 4.497 a.132.1.3 107776 1bedA 181 5.262 c.47.1.13 90330 2itbA 206 6.649 2inpA 494 7.755 1fvkA 189 8.024 c.47.1.13 90351 1e7uA 961 9.611 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 2f3yA 148 10.41 1otvA 259 10.59 a.132.1.4 93526 1eemA 241 10.90 a.45.1.1,c.47.1.5 17717,33011 2o5gA 148 11.57 1ggzA 148 14.41 a.39.1.5 70176 1oq9A 363 17.46 a.25.1.2 87257 2obhA 143 18.05 2h5xA 196 18.11 1tadA 324 18.18 a.66.1.1,c.37.1.8 18194,32077 2sasA 185 19.19 a.39.1.5 17258 2j2fA 363 19.76 2cujA 108 20.61 a.4.1.18 130812 1tyhA 248 22.00 a.132.1.3 107458 2i4iA 417 22.01 2uw1A 338 23.25 2f6rA 281 24.37 2ccmA 191 25.19 1qyiA 384 26.40 c.108.1.13 96595 2gicA 422 28.59 a.260.1.1 135227 1e0tA 470 28.98 b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1m7sA 484 30.19 e.5.1.1 74574 2hpsA 186 31.65 2h5nA 133 35.26 2gv5A 161 35.45 2q9uA 414 36.95 1x3mA 415 38.54 c.55.1.2,c.55.1.2 121664,121665 2pvfA 334 39.54 1njrA 284 40.77 c.50.1.2 103858 2rdpA 150 40.86 2dcnA 311 41.45 c.72.1.1 131374 2i1mA 333 42.14 1yyaA 250 43.83 1yioA 208 44.34 a.4.6.2,c.23.1.1 123326,123327 1wpbA 172 44.38 a.233.1.1 114783 1e3oC 160 46.65 a.4.1.1,a.35.1.1 59197,59198 1t7lA 766 49.15 1otkA 249 49.33 a.25.1.2 93521 2q4xA 221 49.80 a.132.1.3 139880 2e1zA 415 50.87 1v54D 147 51.34 f.23.1.1 100325 2f2gA 221 51.36 a.132.1.3 132816 2q71A 356 52.07 1qazA 351 53.22 a.102.3.1 18848 1yakA 263 54.13 a.132.1.3 122833 2nq5A 755 54.30 2jejA 358 54.76 d.240.1.1,e.8.1.7 138284,138285 2nlyA 245 58.41 c.6.2.7 138364 1e8yA 966 58.62 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1miwA 404 61.14 a.173.1.1,d.218.1.4 79162,79163 2ip2A 334 61.30 1t46A 313 61.73 d.144.1.7 106397 1urvA 190 61.76 a.1.1.2 113414 2uuuA 584 62.07 2q0oA 236 62.34 2b0tA 738 62.98 2j5bA 348 66.74 3cpgA 282 67.21 1h3gA 601 67.90 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1tuaA 191 68.77 d.51.1.1,d.51.1.1 107321,107322 1nfp 228 70.45 2pkeA 251 70.64 1vz0A 230 72.05 a.4.14.1,d.268.1.1 108929,108930 1u8xX 472 73.58 c.2.1.5,d.162.1.2 107741,107742 2ifaA 208 73.65 d.90.1.1 137329 2c4eA 302 73.88 2qezA 455 73.94 1qwgA 251 74.49 c.1.27.1 96473 2qolA 376 75.44 2fafA 608 78.78 1uouA 474 79.69 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 1a2xA 159 81.11 a.39.1.5 17251 1f07A 321 82.66 c.1.16.3 59560 2r3sA 335 82.90 1f8mA 429 83.03 c.1.12.7 29315 1aisB 200 84.22 a.74.1.2,a.74.1.2 18384,18385 2v0vA 194 84.54 3cjnA 162 84.86 1fgkA 310 85.49 d.144.1.7 41693 1r3sA 367 86.40 c.1.22.1 96963 2pm7A 399 87.13 2c1mA 424 87.97 2jh3A 474 88.01 1nbwA 607 88.12 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 2fiqA 420 88.42 c.1.10.7 133527 2etvA 346 89.63 c.92.2.4 132372