# List of top-scoring protein chains for T0444.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w68A 390 7.56e-18 a.25.1.2 109216 2uw2A 332 8.32e-18 1smqA 399 1.24e-16 a.25.1.2 105766 1jk0A 419 2.86e-16 a.25.1.2 63142 2p1iA 349 5.23e-16 2o1zA 311 1.01e-15 1piyA 375 2.32e-14 a.25.1.2 94710 1ribA 375 2.67e-14 a.25.1.2 16788 2aniA 346 2.71e-14 1pizA 375 2.75e-14 a.25.1.2 94712 1mxrA 375 2.86e-14 a.25.1.2 85197 1syyA 346 3.28e-14 a.25.1.2 106126 1rnrA 375 3.43e-14 a.25.1.2 16798 2alxA 340 3.92e-14 a.25.1.2 126986 1av8A 340 3.98e-14 a.25.1.2 16796 1pm2A 339 4.08e-14 a.25.1.2 94887 1rsrA 375 4.31e-14 a.25.1.2 97815 1yfdA 375 4.31e-14 a.25.1.2 123059 1pj0A 375 4.54e-14 a.25.1.2 94714 2av8A 340 4.75e-14 a.25.1.2 16792 1pfrA 340 5.05e-14 a.25.1.2 16790 1biqB 375 5.18e-14 a.25.1.2 16787 1biqA 375 6.56e-14 a.25.1.2 16786 1kgnA 329 4.32e-13 a.25.1.2 68584 2rccA 346 6.85e-13 1jk0B 345 8.81e-13 a.25.1.2 63143 1uzrA 296 1.02e-12 a.25.1.2 108178 1r2fA 319 2.39e-12 a.25.1.2 16800 1tt4A 396 0.000526 d.128.1.3 107289 2nzlA 392 0.000895 2ji4A 379 0.001245 2i3yA 215 0.001771 2bw0A 329 0.001835 b.46.1.1,c.65.1.1 129303,129304 2cfyA 521 0.001908 2c4kA 370 0.002106 c.61.1.2,c.61.1.2 129824,129825 2i9pA 319 0.002524 1ufhA 180 0.002574 d.108.1.1 88485 2r55A 231 0.002594 2vo1A 295 0.002682 2f73A 149 0.002993 b.60.1.2 133071 2gx8A 397 0.003199 c.135.1.1 135825 1zsyA 357 0.003289 2bijA 305 0.003569 1u8xX 472 0.003655 c.2.1.5,d.162.1.2 107741,107742 2vktA 289 0.003894 2aw5A 575 0.004153 2v7oA 336 0.004369 2cjzA 305 0.004589 2qm3A 373 0.004752 2c7sA 313 0.004842 2jisA 515 0.004988 2ox0A 381 0.005290 2vreA 296 0.005360 2bbwA 246 0.005795 2j67A 178 0.005824 2uyyA 316 0.005835 2izvA 187 0.005859 2chlA 351 0.005879 2c0cA 362 0.006199 3couA 217 0.006431 2o6iA 480 0.006485 a.211.1.1 138920 2bleA 367 0.006643 2jakA 392 0.006691 a.118.1.20 138240 1to9A 260 0.006781 a.132.1.3 107172 2basA 431 0.007056 c.1.33.1,d.110.6.2 128244,128245 2cl3A 230 0.007073 2c2nA 339 0.007181 2jgyA 279 0.007502 2hw4A 144 0.007587 d.322.1.1 136821 2h5gA 463 0.007624 2c30A 321 0.007714 2jifA 404 0.007816 2ikkA 173 0.008534 2uz9A 476 0.008850 2gseA 501 0.008911 2j8qA 227 0.009112 1zv4X 158 0.009554 1zsvA 349 0.009938 2p8uA 478 0.01003 2f6qA 280 0.01016 c.14.1.3 133055 2j8zA 354 0.01028 1z05A 429 0.01046 a.4.5.63,c.55.1.10,c.55.1.10 124298,124299,124300 2hw5A 286 0.01096 2j51A 325 0.01133 2forA 323 0.01177 1sfsA 240 0.01177 c.1.8.8 98846 2v62A 345 0.01181 2iikA 418 0.01282 2vn8A 375 0.01303 2c46A 241 0.01351 2dfdA 342 0.01450 2pn8A 211 0.01460 3cekA 313 0.01531 2f8aA 208 0.01581 c.47.1.10 133119 2rf0A 89 0.01606 2jeoA 245 0.01615 2auaA 224 0.01640 d.166.1.6 127326 2vd6A 503 0.01685 2uxwA 607 0.01688 2izzA 322 0.01717 2atvA 196 0.01752 c.37.1.8 127308 1yb5A 351 0.01761 b.35.1.2,c.2.1.1 116601,116602 2j91A 503 0.01773 3bv6A 379 0.01834 3b8bA 292 0.01850 2fimA 276 0.01881 2bygA 117 0.01932 b.36.1.1 129480 2he3A 208 0.01974 2psoA 237 0.01987 2r4hA 112 0.01995 2bzlA 325 0.01996 3b7oA 316 0.02015 2iwqA 123 0.02021 1zkpA 268 0.02053 d.157.1.9 125205 2c60A 111 0.02062 d.15.2.2 129966 2j1lA 214 0.02068 2j90A 304 0.02074 2g76A 335 0.02083 2cfvA 316 0.02087 2vpiA 218 0.02094 2pokA 481 0.02098 2nz6A 316 0.02100 2jiiA 352 0.02111 2vr2A 541 0.02118 2ap1A 327 0.02151 c.55.1.10,c.55.1.10 127108,127109 2qk4A 452 0.02173 2i0zA 447 0.02212 2flsA 132 0.02256 3bljA 221 0.02257 2fneA 117 0.02282 b.36.1.1 133813 2nn5A 184 0.02375 2omkA 231 0.02377 3b76A 118 0.02397 3berA 249 0.02418 2iwoA 120 0.02433 2ojwA 384 0.02456 2fv8A 207 0.02476 c.37.1.8 134199 2v40A 459 0.02487 1x7fA 385 0.02490 b.62.1.2,c.1.8.12 109498,109499 2gzvA 114 0.02497 3b7kA 333 0.02539 2ihdA 155 0.02595 2qq2A 193 0.02631 2clpA 347 0.02694 2fvvA 194 0.02718 d.113.1.1 134226 2p6nA 191 0.02803 2h4vA 320 0.02806 2okqA 141 0.02839 2fzvA 279 0.02851 c.23.5.4 134478 1zswA 338 0.02903 d.32.1.10,d.32.1.10 125620,125621 2h1iA 226 0.02904 2bt2A 161 0.02910 2rf5A 258 0.02932 1ysjA 404 0.02986 c.56.5.4,d.58.19.1 123975,123976 2g3yA 211 0.03090 c.37.1.8 134574 2ppiA 144 0.03109 2c9hA 444 0.03190 2btpA 256 0.03251 2p31A 181 0.03443 2jfkA 433 0.03547 2jfdA 425 0.03567 2h4uA 145 0.03680 d.38.1.5 136082 1y2iA 133 0.03780 d.230.5.1 116401 1sf9A 128 0.03785 b.34.15.1 98831 2gjvA 175 0.03839 d.323.1.2 135289 2ht9A 146 0.03986 1q7rA 219 0.04039 c.23.16.1 96054 2ae8A 221 0.04166 d.14.1.9,d.14.1.9 126604,126605 1su1A 208 0.04195 d.159.1.7 106016 2gs3A 185 0.04342 3c5eA 570 0.04651 2g62A 325 0.05063 a.268.1.1 134685 1za0A 275 0.1444 a.25.1.2 124774 2qq8A 334 0.5805 3cpsA 354 0.8406 2oniA 392 2.435 2qfzA 345 2.436 2k1bA 73 2.639 2qg5A 294 2.819 2pmxA 187 2.991 3conA 190 3.149 3b6uA 372 3.382 3ceyA 474 4.215 2r77A 205 4.467 3b6vA 395 5.157 3c5hA 255 5.452 3borA 237 5.835 2nq3A 173 5.935 b.7.1.1 138452 2r2oA 138 6.012 3bfnA 379 6.023 2poeA 185 6.064 3cbqA 195 6.352 2q0vA 156 6.457 2rdbA 498 7.134 2poyA 186 7.233 2hszA 243 8.062 c.108.1.6 136726 2p82A 355 8.698 1t0qA 498 8.764 a.25.1.2 106220 2incA 491 8.785 a.25.1.2 137524 3byvA 377 9.638 3bkpA 232 10.09 3c5cA 187 11.13 2h9lA 329 13.96 1xpgA 765 16.71 1xdjA 766 16.71 2q2fA 89 18.17 2qluA 314 18.99 2pmyA 91 20.20 3bq5A 766 20.42 2qkrA 313 21.57 1e1hA 287 22.70 d.92.1.7 83167 2ihiA 395 23.69 1gv4A 528 23.90 c.3.1.5,c.3.1.5,d.87.1.1 70589,70590,70591 2fgyA 542 25.07 2a7rA 366 25.54 1u2xA 474 27.71 c.72.1.3 107622 2i71A 400 28.77 3cc9A 396 28.99 2ovyA 362 29.56 2ht1A 433 32.11 2onkC 284 33.02 2pc1A 201 35.94 2hujA 140 36.08 a.24.26.1 136777 2og5A 357 36.10 2hmcA 344 37.94 1u9dA 122 40.16 d.80.1.5 107749 2oc5A 244 41.75 1ydxA 406 42.36 d.287.1.2,d.287.1.2 123004,123005 1p99A 295 43.43 c.94.1.1 94384 2i7gA 376 45.00 2inpA 494 46.04 2innA 511 46.39 1afrA 345 46.95 a.25.1.2 16805 1t9bA 677 46.96 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 1oq9A 363 47.17 a.25.1.2 87257 3c5yA 231 48.38 3ccfA 279 48.52 2dgaA 565 53.59 3c8vA 496 56.66 1kbuA 349 56.99 a.60.9.1,d.163.1.1 72284,72285 2jcdA 345 57.28 3chhA 336 57.71 2j2fA 363 58.95 2r78A 117 59.20 1pvpA 349 59.28 a.60.9.1,d.163.1.1 95177,95178 1pvrA 349 59.74 a.60.9.1,d.163.1.1 95185,95186 2fg9A 178 59.79 b.45.1.1 133426 1rp4A 389 63.08 a.227.1.1 105027 1y8aA 332 63.09 1rq1A 386 64.15 a.227.1.1 105047 1hx1A 400 65.69 c.55.1.1,c.55.1.1 61348,61349 2oqmA 192 65.87 3cmbA 283 65.88 3cpxA 321 68.34 3b3qA 577 68.36 2p57A 144 68.36 1r8gA 372 71.39 d.128.1.3 104845 2htdA 140 71.95 1xhcA 367 74.45 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2eh6A 375 74.48 2cgqA 113 75.35 2hrzA 342 75.79 2qe9A 178 76.46 2f3lA 184 76.73 b.80.8.1 132872 2p06A 114 78.05 a.204.1.3 139452 2yvxA 473 79.49 2igtA 332 83.36 c.66.1.51 137401 2h80A 81 83.47 2rd0A 1096 84.80 2herA 368 85.11 3c6cA 316 85.91 2uw1B 338 86.28 2f57A 317 87.43 2asyA 123 87.63 d.58.4.12 127278 2qcxA 263 89.03