# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1xsm 390 3.09e-36 1jk0A 419 4.40e-36 a.25.1.2 63142 1w68A 390 2.57e-35 a.25.1.2 109216 1syyA 346 1.93e-34 a.25.1.2 106126 1xikA 375 3.76e-34 a.25.1.2 16784 2rccA 346 4.27e-34 1mxrA 375 1.00e-33 a.25.1.2 85197 1kgnA 329 7.15e-33 a.25.1.2 68584 1jk0B 345 4.33e-32 a.25.1.2 63143 1r2fA 319 4.90e-32 a.25.1.2 16800 3chhA 336 3.15e-10 2jcdA 345 1.35e-08 2incA 491 4.74e-06 a.25.1.2 137524 2inpC 328 2.73e-05 2j2fA 363 5.06e-05 2uw1A 338 0.000129 1t0qA 498 0.000159 a.25.1.2 106220 2inpA 494 0.000204 1mhyD 521 0.000315 a.25.1.2 16780 1za0A 275 0.000379 a.25.1.2 124774 1mtyB 384 0.000411 a.25.1.2 16740 2incB 322 0.000839 a.25.1.2 137525 1t0qB 330 0.002027 a.25.1.2 106221 2oc5A 244 0.002100 1mtyD 512 0.004318 a.25.1.2 16742 1mhyB 395 0.004466 a.25.1.2 16781 1tyhA 248 0.007006 a.132.1.3 107458 1oq9A 363 0.007951 a.25.1.2 87257 1afrA 345 0.01061 a.25.1.2 16805 2qcxA 263 0.01215 1uddA 226 0.06769 a.132.1.3 107776 1otkA 249 0.07284 a.25.1.2 93521 2f2gA 221 0.08541 a.132.1.3 132816 1rcwA 231 0.1055 a.132.1.4 97299 1yakA 263 0.1093 a.132.1.3 122833 3bjdA 332 0.1280 1rtwA 220 0.1527 a.132.1.3 97823 2a2mA 258 0.1811 a.132.1.3 126039 1z72A 225 0.1898 a.132.1.3 124583 2qzcA 214 0.2044 1otvA 259 0.5958 a.132.1.4 93526 2q4xA 221 0.9480 a.132.1.3 139880 3bfxA 296 3.998 1oyzA 280 4.457 a.118.1.16 93775 1dmtA 696 5.480 d.92.1.4 40296 2v8tA 302 6.700 1jh6A 189 6.908 d.61.1.1 66707 1munA 225 7.350 a.96.1.2 18744 2ewfA 610 7.467 2dvzA 314 7.949 2eh3A 179 10.08 1j99A 293 10.29 c.37.1.5 71618 1fmjA 351 11.38 c.37.1.5 59879 1ls6A 295 12.19 c.37.1.5 91115 2cwlA 302 13.86 a.25.1.3 130927 1dpsA 167 14.02 a.25.1.1 16716 2itbA 206 14.03 1ggzA 148 18.75 a.39.1.5 70176 1r1hA 696 19.01 d.92.1.4 104756 1zd1A 284 20.49 1mp8A 281 20.55 d.144.1.7 91384 2d5vA 164 21.53 1jt6A 188 22.18 a.4.1.9,a.121.1.1 67247,67248 1jkvA 266 22.37 a.25.1.3 71719 2tct 207 23.27 1o9iA 266 24.22 a.25.1.3 92671 1vjxA 157 27.50 a.25.1.1 100837 1ryt 190 29.92 1g7oA 215 30.41 a.45.1.1,c.47.1.5 60332,60333 2qf9A 179 30.87 2g7gA 213 31.37 a.4.1.9,a.121.1.1 134732,134733 1aquA 297 32.03 c.37.1.5 31942 1yuzA 202 32.30 a.25.1.1,g.41.5.1 124077,124078 1vi9A 299 32.87 c.72.1.5 100750 2b6cA 220 33.16 a.118.1.17 127983 1g3mA 294 33.75 c.37.1.5 83268 1ciyA 590 34.34 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 2dtr 226 34.96 3bj6A 152 38.74 1lkoA 191 39.80 a.25.1.1,g.41.5.1 78063,78064 1dt1A 129 40.71 a.3.1.1 15811 1sf9A 128 40.88 b.34.15.1 98831 2glcA 342 41.57 1zroA 602 42.53 a.264.1.1,a.264.1.1 125551,125552 2rdpA 150 42.97 1g8iA 190 44.35 a.39.1.5 60363 1m7sA 484 45.27 e.5.1.1 74574 2nsaA 170 45.72 1pbv 195 46.79 2di4A 238 47.98 a.269.1.1 131522 1rh5C 53 48.81 f.23.29.1 97466 1hm6A 346 50.25 a.65.1.1 18147 2fnaA 357 50.82 a.4.5.11,c.37.1.20 133809,133810 2cihA 183 51.14 1z6nA 167 51.31 c.47.1.1 124530 1h3oB 76 56.48 a.22.1.3 76645 1loxA 662 58.76 a.119.1.2,b.12.1.1 19238,23638 1qwlA 505 58.98 e.5.1.1 96483 1ubkL 534 59.22 e.18.1.1 88422 1yi8A 351 59.53 1wwmA 190 63.22 a.132.1.3 121363 1sigA 339 63.47 a.177.1.1 19068 2g7lA 243 64.66 a.4.1.9,a.121.1.1 134734,134735 1t06A 235 67.29 a.118.1.17 106194 2jhnA 295 72.11 2o3lA 85 72.30 1zpyA 95 72.91 a.25.1.5 125479 1fx7A 230 73.12 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1ngnA 155 79.30 a.96.1.2 85697 1o0yA 260 80.92 c.1.10.1 80756 1v9dA 340 82.09 a.207.1.1 100535 1uhnA 189 85.15 a.39.1.5 99399 1zp4A 304 85.67 2zfoB 142 85.82 2zfdA 226 86.09 1rrmA 386 86.26 e.22.1.2 105081 1jf2A 195 87.01 a.39.1.5 62930 1lvaA 258 87.82 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1h2rL 534 88.36 e.18.1.1 43298 2dtrA 226 88.77 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2rioA 434 88.82