# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jk0A 419 6.49e-35 a.25.1.2 63142 1xsm 390 8.72e-35 1w68A 390 9.50e-34 a.25.1.2 109216 1syyA 346 3.68e-33 a.25.1.2 106126 1xikA 375 7.04e-33 a.25.1.2 16784 1mxrA 375 1.05e-32 a.25.1.2 85197 2rccA 346 1.58e-32 1kgnA 329 1.47e-31 a.25.1.2 68584 1jk0B 345 5.42e-31 a.25.1.2 63143 1r2fA 319 7.51e-31 a.25.1.2 16800 3chhA 336 6.48e-10 2jcdA 345 3.86e-08 2incA 491 5.26e-06 a.25.1.2 137524 2inpC 328 1.34e-05 2j2fA 363 0.000100 2uw1A 338 0.000160 1mhyD 521 0.000163 a.25.1.2 16780 2inpA 494 0.000255 1t0qA 498 0.000258 a.25.1.2 106220 1mtyB 384 0.000917 a.25.1.2 16740 1za0A 275 0.000926 a.25.1.2 124774 2incB 322 0.001333 a.25.1.2 137525 1t0qB 330 0.003115 a.25.1.2 106221 2oc5A 244 0.005656 1tyhA 248 0.006499 a.132.1.3 107458 1afrA 345 0.008599 a.25.1.2 16805 1mtyD 512 0.008644 a.25.1.2 16742 1oq9A 363 0.01435 a.25.1.2 87257 2qcxA 263 0.01962 1mhyB 395 0.02057 a.25.1.2 16781 1yakA 263 0.06876 a.132.1.3 122833 1otkA 249 0.09590 a.25.1.2 93521 1uddA 226 0.1261 a.132.1.3 107776 2f2gA 221 0.1358 a.132.1.3 132816 3bjdA 332 0.1632 1rcwA 231 0.1905 a.132.1.4 97299 2a2mA 258 0.2989 a.132.1.3 126039 2qzcA 214 0.3066 1rtwA 220 0.3255 a.132.1.3 97823 1z72A 225 0.4227 a.132.1.3 124583 1otvA 259 0.4353 a.132.1.4 93526 2q4xA 221 0.5571 a.132.1.3 139880 1munA 225 4.960 a.96.1.2 18744 1oyzA 280 5.848 a.118.1.16 93775 2v8tA 302 6.608 3bfxA 296 7.776 1yi8A 351 8.505 2ewfA 610 9.128 2cwlA 302 11.34 a.25.1.3 130927 1dmtA 696 12.98 d.92.1.4 40296 2dvzA 314 13.44 1j99A 293 15.28 c.37.1.5 71618 1fmjA 351 16.88 c.37.1.5 59879 2dtr 226 16.89 2q52A 224 17.41 1jh6A 189 17.50 d.61.1.1 66707 1z6nA 167 17.54 c.47.1.1 124530 1hm6A 346 19.11 a.65.1.1 18147 1mp8A 281 21.56 d.144.1.7 91384 2itbA 206 22.24 1ciyA 590 23.15 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 3cjnA 162 23.86 1o9iA 266 26.19 a.25.1.3 92671 1jkvA 266 27.24 a.25.1.3 71719 1uby 367 30.21 2jhnA 295 32.54 1ls6A 295 33.52 c.37.1.5 91115 2glcA 342 35.96 1ic8A 194 37.98 a.4.1.1,a.35.1.1 76740,76741 2f94F 350 37.99 1yv5A 374 38.06 2eh3A 179 38.32 3bqpA 80 38.91 2qf9A 179 39.37 1sf9A 128 40.73 b.34.15.1 98831 1g7oA 215 41.43 a.45.1.1,c.47.1.5 60332,60333 2d5vA 164 42.39 2qq9A 226 45.72 1dt1A 129 48.21 a.3.1.1 15811 1zroA 602 48.43 a.264.1.1,a.264.1.1 125551,125552 1g8iA 190 48.45 a.39.1.5 60363 2b6cA 220 48.84 a.118.1.17 127983 1vjxA 157 48.90 a.25.1.1 100837 2tct 207 52.09 1r1hA 696 52.23 d.92.1.4 104756 1kz7A 353 52.59 a.87.1.1,b.55.1.1 73333,73334 1m7sA 484 52.86 e.5.1.1 74574 1zd1A 284 53.41 1dpsA 167 53.74 a.25.1.1 16716 2i3fA 224 53.82 2g7gA 213 53.86 a.4.1.9,a.121.1.1 134732,134733 1ggzA 148 54.00 a.39.1.5 70176 2ex0A 399 54.01 c.87.1.9 132494 1ubkL 534 54.13 e.18.1.1 88422 1qwlA 505 57.67 e.5.1.1 96483 2o3lA 85 58.64 1jt6A 188 59.77 a.4.1.9,a.121.1.1 67247,67248 1aquA 297 60.24 c.37.1.5 31942 2zg5A 397 60.80 1bgfA 124 61.16 a.90.1.1 18537 1yhlA 362 62.79 1g3mA 294 63.44 c.37.1.5 83268 2cihA 183 64.16 1rh5C 53 64.95 f.23.29.1 97466 2okcA 445 66.07 1pbv 195 68.36 1rrmA 386 69.04 e.22.1.2 105081 2rdpA 150 69.43 2cvzA 289 69.50 a.100.1.1,c.2.1.6 130890,130891 1t06A 235 70.52 a.118.1.17 106194 1zpyA 95 70.62 a.25.1.5 125479 2qisA 374 70.81 1ryt 190 70.97 1oaoC 729 73.04 e.26.1.3 86746 1r6fA 310 74.32 e.46.1.1 97149 2qtzA 539 76.90 1vi9A 299 77.54 c.72.1.5 100750 1fx7A 230 82.31 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2ethA 154 82.37 a.4.5.28 132358 1yuzA 202 83.09 a.25.1.1,g.41.5.1 124077,124078 2nsaA 170 84.64 2q71A 356 84.70 2g7lA 243 84.95 a.4.1.9,a.121.1.1 134734,134735 1ciy 590 85.35 1wpbA 172 86.14 a.233.1.1 114783 2o4tA 100 86.44 1ouvA 273 86.80 a.118.18.1 93570 2aplA 157 87.97 a.258.1.1 127132 1cs0A 1073 89.80 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519