# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jk0A 419 2.47e-36 a.25.1.2 63142 1xsm 390 3.44e-36 1w68A 390 2.64e-35 a.25.1.2 109216 1mxrA 375 2.33e-34 a.25.1.2 85197 1syyA 346 2.47e-34 a.25.1.2 106126 1xikA 375 2.59e-34 a.25.1.2 16784 2rccA 346 7.65e-34 1kgnA 329 2.00e-32 a.25.1.2 68584 1jk0B 345 2.91e-32 a.25.1.2 63143 1r2fA 319 9.14e-32 a.25.1.2 16800 3chhA 336 3.48e-10 2jcdA 345 3.21e-08 2incA 491 3.53e-06 a.25.1.2 137524 2inpC 328 7.79e-06 1mtyB 384 4.64e-05 a.25.1.2 16740 2inpA 494 5.18e-05 1mhyD 521 6.44e-05 a.25.1.2 16780 2j2fA 363 8.37e-05 1t0qA 498 8.85e-05 a.25.1.2 106220 2incB 322 9.38e-05 a.25.1.2 137525 2uw1A 338 0.000288 1mtyD 512 0.000326 a.25.1.2 16742 1t0qB 330 0.000453 a.25.1.2 106221 1za0A 275 0.000765 a.25.1.2 124774 2oc5A 244 0.001421 1mhyB 395 0.002235 a.25.1.2 16781 1oq9A 363 0.004870 a.25.1.2 87257 1tyhA 248 0.004926 a.132.1.3 107458 1afrA 345 0.005682 a.25.1.2 16805 2qcxA 263 0.01583 2f2gA 221 0.05732 a.132.1.3 132816 1yakA 263 0.07350 a.132.1.3 122833 1otkA 249 0.07813 a.25.1.2 93521 1rtwA 220 0.1129 a.132.1.3 97823 2qzcA 214 0.1779 3bjdA 332 0.1811 2q4xA 221 0.2924 a.132.1.3 139880 1z72A 225 0.3028 a.132.1.3 124583 1rcwA 231 0.3463 a.132.1.4 97299 2a2mA 258 0.3589 a.132.1.3 126039 1uddA 226 0.3763 a.132.1.3 107776 1otvA 259 0.4039 a.132.1.4 93526 2ewfA 610 3.621 1oyzA 280 4.131 a.118.1.16 93775 2v8tA 302 4.292 2d5vA 164 5.444 1dmtA 696 5.626 d.92.1.4 40296 2cwlA 302 8.126 a.25.1.3 130927 2dvzA 314 9.103 1ciyA 590 10.08 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 3bfxA 296 10.59 1o9iA 266 10.63 a.25.1.3 92671 1jkvA 266 10.83 a.25.1.3 71719 1sf9A 128 11.23 b.34.15.1 98831 1fmjA 351 13.71 c.37.1.5 59879 1ggzA 148 14.06 a.39.1.5 70176 1jh6A 189 15.12 d.61.1.1 66707 1g8iA 190 15.29 a.39.1.5 60363 1yi8A 351 16.74 2r2iA 198 16.81 1r1hA 696 17.46 d.92.1.4 104756 1j99A 293 18.40 c.37.1.5 71618 2eh3A 179 18.64 1uby 367 19.10 2nsaA 170 19.22 2itbA 206 23.79 1rrmA 386 24.46 e.22.1.2 105081 1dt1A 129 25.90 a.3.1.1 15811 1zd1A 284 27.25 1pbv 195 29.26 2aalA 131 30.56 d.80.1.6 126483 1pvaA 110 31.88 a.39.1.4 17207 2jhnA 295 32.02 1yv5A 374 32.05 1epuA 591 32.67 e.25.1.1 43358 1h3oB 76 32.72 a.22.1.3 76645 2o3lA 85 34.59 1wpbA 172 35.41 a.233.1.1 114783 2q9rA 200 35.92 1ls6A 295 36.18 c.37.1.5 91115 1w36B 1180 36.40 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2oqaA 241 37.80 2cvzA 289 39.20 a.100.1.1,c.2.1.6 130890,130891 2pexA 153 44.53 2h5nA 133 46.00 2f94F 350 47.55 1yuzA 202 48.45 a.25.1.1,g.41.5.1 124077,124078 1m7sA 484 48.65 e.5.1.1 74574 2g7gA 213 50.65 a.4.1.9,a.121.1.1 134732,134733 1fx7A 230 51.65 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2gsmA 566 54.23 f.24.1.1 135589 1j30A 144 56.21 a.25.1.1 90806 1qv1A 195 56.70 a.39.1.5 96347 1b04A 318 58.55 d.142.2.2 41579 2o4tA 100 61.14 1hm6A 346 61.40 a.65.1.1 18147 1ofcX 304 62.13 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1g3mA 294 63.10 c.37.1.5 83268 2fnaA 357 63.63 a.4.5.11,c.37.1.20 133809,133810 1t8tA 271 65.13 c.37.1.5 106685 2bv6A 142 65.27 1jf2A 195 65.28 a.39.1.5 62930 3bmaA 407 65.62 2rdpA 150 65.79 1sigA 339 66.25 a.177.1.1 19068 1aquA 297 67.58 c.37.1.5 31942 3d1uA 288 70.31 1auiB 169 70.51 a.39.1.5 17325 1xvjA 109 71.68 1nstA 325 71.86 c.37.1.5 31951 2ex0A 399 72.04 c.87.1.9 132494 1hlbA 158 72.93 a.1.1.2 15625 2bmaA 470 73.11 1wwmA 190 73.43 a.132.1.3 121363 1zpyA 95 73.55 a.25.1.5 125479 2glcA 342 75.27 1munA 225 76.56 a.96.1.2 18744 1w3wA 327 76.68 2v6eA 558 77.11 3cjnA 162 77.17 1sl8A 191 78.35 a.39.1.5 112099 2zcoA 293 79.08 1ib2A 349 80.42 a.118.1.8 62141 1gweA 503 80.55 e.5.1.1 70667 2b6cA 220 80.99 a.118.1.17 127983 1hbzA 498 82.37 e.5.1.1 60937 2zfoB 142 83.54 1lshA 1056 84.19 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 2ev0A 142 84.68 a.4.5.24,a.76.1.1 132413,132414 1vkjA 285 86.35 c.37.1.5 108666 1bgfA 124 88.74 a.90.1.1 18537 1jt6A 188 89.19 a.4.1.9,a.121.1.1 67247,67248 2gz6A 388 89.24