# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jk0A 419 6.54e-30 a.25.1.2 63142 1xsm 390 7.57e-30 1w68A 390 3.98e-29 a.25.1.2 109216 2rccA 346 1.90e-28 1syyA 346 2.92e-28 a.25.1.2 106126 1xikA 375 4.07e-28 a.25.1.2 16784 1mxrA 375 1.39e-27 a.25.1.2 85197 1kgnA 329 1.72e-27 a.25.1.2 68584 1r2fA 319 8.05e-27 a.25.1.2 16800 1jk0B 345 9.35e-27 a.25.1.2 63143 3chhA 336 4.10e-09 2jcdA 345 1.54e-07 2incA 491 0.000132 a.25.1.2 137524 2inpC 328 0.000320 2j2fA 363 0.000403 2uw1A 338 0.001273 1t0qA 498 0.002570 a.25.1.2 106220 1mhyD 521 0.002694 a.25.1.2 16780 1za0A 275 0.002834 a.25.1.2 124774 2incB 322 0.004877 a.25.1.2 137525 2inpA 494 0.005394 2oc5A 244 0.007762 1mtyB 384 0.01126 a.25.1.2 16740 1mtyD 512 0.02057 a.25.1.2 16742 1t0qB 330 0.02743 a.25.1.2 106221 1afrA 345 0.03927 a.25.1.2 16805 1mhyB 395 0.05338 a.25.1.2 16781 2qcxA 263 0.05595 1tyhA 248 0.05744 a.132.1.3 107458 1oq9A 363 0.1164 a.25.1.2 87257 2f2gA 221 0.1230 a.132.1.3 132816 1rtwA 220 0.1670 a.132.1.3 97823 1rcwA 231 0.2058 a.132.1.4 97299 1yakA 263 0.2466 a.132.1.3 122833 1otkA 249 0.2679 a.25.1.2 93521 2a2mA 258 0.2693 a.132.1.3 126039 3bjdA 332 0.2870 2qzcA 214 0.4154 1uddA 226 0.4928 a.132.1.3 107776 1z72A 225 0.6582 a.132.1.3 124583 1otvA 259 1.068 a.132.1.4 93526 2q4xA 221 1.205 a.132.1.3 139880 1oyzA 280 1.869 a.118.1.16 93775 2itbA 206 3.177 1dmtA 696 6.121 d.92.1.4 40296 1vjxA 157 7.687 a.25.1.1 100837 2v8tA 302 8.277 3bfxA 296 8.978 1munA 225 12.31 a.96.1.2 18744 2tct 207 12.87 2dvzA 314 13.98 1mp8A 281 15.25 d.144.1.7 91384 1r1hA 696 15.38 d.92.1.4 104756 1jkvA 266 15.45 a.25.1.3 71719 2eh3A 179 15.75 1jh6A 189 16.73 d.61.1.1 66707 1o9iA 266 16.78 a.25.1.3 92671 2cwlA 302 18.73 a.25.1.3 130927 2b6cA 220 21.77 a.118.1.17 127983 1ryt 190 21.90 1j99A 293 22.23 c.37.1.5 71618 1vi9A 299 24.11 c.72.1.5 100750 1dt1A 129 24.54 a.3.1.1 15811 1dpsA 167 25.18 a.25.1.1 16716 1lkoA 191 28.93 a.25.1.1,g.41.5.1 78063,78064 1eyhA 144 30.03 a.118.9.1 19214 2g7gA 213 30.72 a.4.1.9,a.121.1.1 134732,134733 1ls6A 295 32.59 c.37.1.5 91115 1t06A 235 33.96 a.118.1.17 106194 1fmjA 351 34.23 c.37.1.5 59879 1hm6A 346 34.67 a.65.1.1 18147 1sf9A 128 35.72 b.34.15.1 98831 2ewfA 610 36.05 1g7oA 215 37.03 a.45.1.1,c.47.1.5 60332,60333 2di4A 238 38.98 a.269.1.1 131522 2fzfA 175 39.28 a.25.1.1 134437 1o0yA 260 40.86 c.1.10.1 80756 2qf9A 179 44.25 2g7lA 243 44.80 a.4.1.9,a.121.1.1 134734,134735 1xnfA 275 45.13 a.118.8.1 115580 2ppvA 332 45.47 1jt6A 188 49.92 a.4.1.9,a.121.1.1 67247,67248 2q83A 346 50.83 2cihA 183 51.29 1yuzA 202 52.33 a.25.1.1,g.41.5.1 124077,124078 3d1uA 288 55.52 1sigA 339 55.92 a.177.1.1 19068 2q52A 224 58.22 2gz6A 388 59.86 2dtr 226 60.95 1g3mA 294 62.52 c.37.1.5 83268 2dejA 350 62.86 1z6nA 167 65.24 c.47.1.1 124530 2zfoB 142 66.24 3b40A 417 66.50 1pbv 195 66.77 1lvaA 258 71.41 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1b71A 191 73.17 a.25.1.1,g.41.5.1 16647,45246 2rdpA 150 75.61 2i3fA 224 75.73 2ga9D 469 77.28 2o2zA 323 78.62 1aquA 297 79.50 c.37.1.5 31942 1zroA 602 81.16 a.264.1.1,a.264.1.1 125551,125552 1jf2A 195 82.25 a.39.1.5 62930 2zfdA 226 82.96 1t56A 216 83.54 a.4.1.9,a.121.1.1 106428,106429 1zy9A 564 83.68 b.30.5.11,c.1.8.13 125813,125814 2ex0A 399 83.87 c.87.1.9 132494 1s3qA 173 86.52 a.25.1.1 118848 1yi8A 351 88.95 1nstA 325 89.08 c.37.1.5 31951 1wwmA 190 89.74 a.132.1.3 121363