# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jk0A 419 8.36e-32 a.25.1.2 63142 1xsm 390 1.06e-31 1w68A 390 5.34e-31 a.25.1.2 109216 2rccA 346 2.57e-30 1syyA 346 3.63e-30 a.25.1.2 106126 1xikA 375 5.89e-30 a.25.1.2 16784 1kgnA 329 2.22e-29 a.25.1.2 68584 1mxrA 375 2.34e-29 a.25.1.2 85197 1r2fA 319 1.52e-28 a.25.1.2 16800 1jk0B 345 1.79e-28 a.25.1.2 63143 3chhA 336 9.66e-10 2jcdA 345 4.47e-08 2incA 491 6.67e-05 a.25.1.2 137524 2j2fA 363 9.36e-05 2inpC 328 0.000192 2uw1A 338 0.000449 1t0qA 498 0.001351 a.25.1.2 106220 1za0A 275 0.001472 a.25.1.2 124774 2incB 322 0.002467 a.25.1.2 137525 1mhyD 521 0.003328 a.25.1.2 16780 2inpA 494 0.004164 2oc5A 244 0.004529 1mtyB 384 0.008356 a.25.1.2 16740 1t0qB 330 0.01140 a.25.1.2 106221 1afrA 345 0.01699 a.25.1.2 16805 1mtyD 512 0.01869 a.25.1.2 16742 1tyhA 248 0.02661 a.132.1.3 107458 2qcxA 263 0.03169 1oq9A 363 0.04739 a.25.1.2 87257 1mhyB 395 0.06057 a.25.1.2 16781 2f2gA 221 0.07472 a.132.1.3 132816 1rtwA 220 0.1065 a.132.1.3 97823 1yakA 263 0.1399 a.132.1.3 122833 1otkA 249 0.1983 a.25.1.2 93521 2a2mA 258 0.2716 a.132.1.3 126039 1rcwA 231 0.2834 a.132.1.4 97299 2qzcA 214 0.2979 1uddA 226 0.3028 a.132.1.3 107776 3bjdA 332 0.3855 1z72A 225 0.4976 a.132.1.3 124583 1otvA 259 0.9145 a.132.1.4 93526 2q4xA 221 0.9349 a.132.1.3 139880 1oyzA 280 1.398 a.118.1.16 93775 2itbA 206 3.509 2v8tA 302 5.344 1munA 225 5.950 a.96.1.2 18744 1dmtA 696 7.133 d.92.1.4 40296 1vjxA 157 8.577 a.25.1.1 100837 3bfxA 296 8.686 2cwlA 302 11.44 a.25.1.3 130927 1jkvA 266 12.50 a.25.1.3 71719 2dvzA 314 12.64 1o9iA 266 13.96 a.25.1.3 92671 2tct 207 16.96 2eh3A 179 17.37 2b6cA 220 17.74 a.118.1.17 127983 1r1hA 696 18.72 d.92.1.4 104756 1dt1A 129 20.53 a.3.1.1 15811 1dpsA 167 20.93 a.25.1.1 16716 1mp8A 281 20.95 d.144.1.7 91384 1jh6A 189 21.70 d.61.1.1 66707 1hm6A 346 22.09 a.65.1.1 18147 1vi9A 299 23.77 c.72.1.5 100750 1j99A 293 25.81 c.37.1.5 71618 1yuzA 202 30.17 a.25.1.1,g.41.5.1 124077,124078 1o0yA 260 30.58 c.1.10.1 80756 1sf9A 128 32.07 b.34.15.1 98831 1lkoA 191 33.08 a.25.1.1,g.41.5.1 78063,78064 1ryt 190 33.13 1fmjA 351 33.98 c.37.1.5 59879 1ls6A 295 34.74 c.37.1.5 91115 1xnfA 275 36.36 a.118.8.1 115580 1pbv 195 37.37 2di4A 238 38.27 a.269.1.1 131522 2q52A 224 39.65 2qf9A 179 40.86 1t06A 235 41.79 a.118.1.17 106194 2ewfA 610 44.06 3d1uA 288 44.47 1sigA 339 47.02 a.177.1.1 19068 1eyhA 144 48.05 a.118.9.1 19214 2dtr 226 49.24 1g7oA 215 49.80 a.45.1.1,c.47.1.5 60332,60333 2cihA 183 51.77 2fzfA 175 52.90 a.25.1.1 134437 2ppvA 332 54.05 1jt6A 188 55.58 a.4.1.9,a.121.1.1 67247,67248 2g7gA 213 59.30 a.4.1.9,a.121.1.1 134732,134733 2i3fA 224 62.26 2o2zA 323 62.50 1nstA 325 62.71 c.37.1.5 31951 1z6nA 167 62.82 c.47.1.1 124530 2q83A 346 64.33 1wwmA 190 65.00 a.132.1.3 121363 2glcA 342 65.78 3b40A 417 67.03 2pmvA 399 72.81 2zfoB 142 74.06 2ex0A 399 75.93 c.87.1.9 132494 1dm5A 315 77.75 a.65.1.1 18186 2gz6A 388 78.15 1pq4A 291 78.78 c.92.2.2 94995 1b71A 191 79.01 a.25.1.1,g.41.5.1 16647,45246 1r6fA 310 80.73 e.46.1.1 97149 2rdpA 150 80.93 2r5sA 176 80.97 1g3mA 294 81.64 c.37.1.5 83268 3bqpA 80 84.59 2fnaA 357 84.60 a.4.5.11,c.37.1.20 133809,133810 2d5vA 164 86.06 3bmvA 683 87.81 1mun 225 87.87 1ofcX 304 87.89 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1aquA 297 89.72 c.37.1.5 31942