# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1xsm 390 1.11e-37 1jk0A 419 2.30e-37 a.25.1.2 63142 1w68A 390 8.93e-37 a.25.1.2 109216 1xikA 375 1.29e-35 a.25.1.2 16784 1syyA 346 1.62e-35 a.25.1.2 106126 1mxrA 375 2.68e-35 a.25.1.2 85197 2rccA 346 2.84e-35 1kgnA 329 7.38e-34 a.25.1.2 68584 1jk0B 345 2.48e-33 a.25.1.2 63143 1r2fA 319 2.98e-33 a.25.1.2 16800 3chhA 336 4.05e-11 2jcdA 345 2.59e-09 2incA 491 3.48e-06 a.25.1.2 137524 2inpC 328 1.35e-05 2j2fA 363 2.59e-05 2uw1A 338 3.76e-05 1t0qA 498 0.000140 a.25.1.2 106220 1za0A 275 0.000157 a.25.1.2 124774 2incB 322 0.000210 a.25.1.2 137525 1mhyD 521 0.000231 a.25.1.2 16780 2inpA 494 0.000386 1mtyB 384 0.000515 a.25.1.2 16740 1mtyD 512 0.000561 a.25.1.2 16742 1t0qB 330 0.000835 a.25.1.2 106221 1mhyB 395 0.004929 a.25.1.2 16781 2oc5A 244 0.005441 1afrA 345 0.006109 a.25.1.2 16805 1oq9A 363 0.008429 a.25.1.2 87257 1tyhA 248 0.02454 a.132.1.3 107458 2qcxA 263 0.02555 1otkA 249 0.05143 a.25.1.2 93521 3bjdA 332 0.07588 2f2gA 221 0.08891 a.132.1.3 132816 1rcwA 231 0.09871 a.132.1.4 97299 2qzcA 214 0.2173 1rtwA 220 0.2862 a.132.1.3 97823 1yakA 263 0.3756 a.132.1.3 122833 1z72A 225 0.4945 a.132.1.3 124583 1uddA 226 0.5244 a.132.1.3 107776 2q4xA 221 0.7552 a.132.1.3 139880 1otvA 259 0.9766 a.132.1.4 93526 2a2mA 258 1.201 a.132.1.3 126039 2v8tA 302 2.794 1dmtA 696 4.997 d.92.1.4 40296 1yuzA 202 5.918 a.25.1.1,g.41.5.1 124077,124078 1oyzA 280 7.040 a.118.1.16 93775 2glcA 342 7.443 2ewfA 610 9.202 2cwlA 302 9.844 a.25.1.3 130927 1munA 225 10.06 a.96.1.2 18744 1r1hA 696 10.47 d.92.1.4 104756 3bfxA 296 12.21 1jkvA 266 14.39 a.25.1.3 71719 1o9iA 266 15.10 a.25.1.3 92671 2dvzA 314 15.11 1jh6A 189 16.94 d.61.1.1 66707 1dt1A 129 19.73 a.3.1.1 15811 1j99A 293 21.15 c.37.1.5 71618 1lkoA 191 23.17 a.25.1.1,g.41.5.1 78063,78064 1vi9A 299 24.91 c.72.1.5 100750 1ubkL 534 29.08 e.18.1.1 88422 2eh3A 179 30.15 1ciyA 590 30.53 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 2q52A 224 33.42 2dtr 226 33.48 1sf9A 128 35.06 b.34.15.1 98831 2itbA 206 37.19 1aba 87 37.42 1mp8A 281 38.17 d.144.1.7 91384 2cihA 183 38.86 1g8iA 190 39.89 a.39.1.5 60363 1g7oA 215 40.39 a.45.1.1,c.47.1.5 60332,60333 2qf9A 179 41.54 3bqpA 80 42.93 1pbv 195 43.13 2dq6A 870 43.45 1ls6A 295 43.86 c.37.1.5 91115 1b71A 191 44.74 a.25.1.1,g.41.5.1 16647,45246 1xdpA 687 46.13 a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4 121896,121897,121898,121899 1vjxA 157 46.93 a.25.1.1 100837 1rh5C 53 47.26 f.23.29.1 97466 1vlgA 176 47.59 a.25.1.1 108816 2nsaA 170 50.03 2p3xA 339 50.18 1h2rL 534 50.61 e.18.1.1 43298 1ryt 190 50.79 2d5vA 164 51.24 1g3mA 294 52.18 c.37.1.5 83268 2di4A 238 54.66 a.269.1.1 131522 1s3qA 173 58.48 a.25.1.1 118848 1j30A 144 59.32 a.25.1.1 90806 1jt6A 188 60.06 a.4.1.9,a.121.1.1 67247,67248 1zd1A 284 61.15 1f7uA 607 62.72 a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 2pulA 397 63.17 1xjzA 233 64.77 a.132.1.1 122049 1xsjA 778 65.67 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 1yhlA 362 65.75 2o3lA 85 65.86 2q12A 265 66.15 1n45A 233 66.34 a.132.1.1 79981 1ggzA 148 68.06 a.39.1.5 70176 1ee4A 423 68.43 a.118.1.1 19128 2fzfA 175 69.76 a.25.1.1 134437 1m7sA 484 70.31 e.5.1.1 74574 1l6rA 227 71.14 c.108.1.10 77768 2pq7A 220 73.62 1v9dA 340 74.61 a.207.1.1 100535 1fmjA 351 74.64 c.37.1.5 59879 2ppvA 332 74.88 1zpyA 95 76.74 a.25.1.5 125479 2tpt 440 82.69 1z6nA 167 84.06 c.47.1.1 124530 1o0yA 260 85.41 c.1.10.1 80756 2qwwA 154 86.59 1ub3A 220 89.99 c.1.10.1 88395