# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jk0A 419 3.27e-37 a.25.1.2 63142 1xsm 390 3.51e-37 1w68A 390 7.00e-36 a.25.1.2 109216 1syyA 346 3.86e-35 a.25.1.2 106126 1xikA 375 4.28e-35 a.25.1.2 16784 1mxrA 375 9.74e-35 a.25.1.2 85197 2rccA 346 1.23e-34 1kgnA 329 1.61e-33 a.25.1.2 68584 1jk0B 345 6.00e-33 a.25.1.2 63143 1r2fA 319 8.36e-33 a.25.1.2 16800 3chhA 336 2.08e-10 2jcdA 345 2.58e-08 2incA 491 1.27e-05 a.25.1.2 137524 2inpC 328 3.90e-05 2j2fA 363 6.63e-05 2uw1A 338 0.000216 1mhyD 521 0.000512 a.25.1.2 16780 1t0qA 498 0.000560 a.25.1.2 106220 1za0A 275 0.000613 a.25.1.2 124774 2inpA 494 0.000959 1mtyB 384 0.001094 a.25.1.2 16740 2incB 322 0.002379 a.25.1.2 137525 1t0qB 330 0.004337 a.25.1.2 106221 2oc5A 244 0.008227 1afrA 345 0.02270 a.25.1.2 16805 1tyhA 248 0.02651 a.132.1.3 107458 1oq9A 363 0.03106 a.25.1.2 87257 1mtyD 512 0.03141 a.25.1.2 16742 1otkA 249 0.04596 a.25.1.2 93521 1mhyB 395 0.04962 a.25.1.2 16781 2qcxA 263 0.06875 1yakA 263 0.3016 a.132.1.3 122833 3bjdA 332 0.4448 1uddA 226 0.4594 a.132.1.3 107776 2f2gA 221 0.5253 a.132.1.3 132816 1otvA 259 0.5470 a.132.1.4 93526 1rtwA 220 0.5503 a.132.1.3 97823 2q4xA 221 0.8819 a.132.1.3 139880 1z72A 225 1.061 a.132.1.3 124583 2qzcA 214 1.151 2a2mA 258 1.238 a.132.1.3 126039 1rcwA 231 1.276 a.132.1.4 97299 1munA 225 5.799 a.96.1.2 18744 1ic8A 194 7.270 a.4.1.1,a.35.1.1 76740,76741 1j99A 293 9.304 c.37.1.5 71618 1oyzA 280 10.21 a.118.1.16 93775 2v8tA 302 10.82 1w1kA 560 15.01 d.58.32.1,d.145.1.1 109059,109060 1yi8A 351 16.49 2i7xA 717 18.46 1yhlA 362 19.40 3bfxA 296 19.69 2dvzA 314 21.06 1jh6A 189 25.70 d.61.1.1 66707 1hm6A 346 25.82 a.65.1.1 18147 1t06A 235 25.93 a.118.1.17 106194 2jhnA 295 25.96 1dt1A 129 26.02 a.3.1.1 15811 2dtr 226 26.21 3b40A 417 26.91 1mp8A 281 27.18 d.144.1.7 91384 2cvzA 289 27.30 a.100.1.1,c.2.1.6 130890,130891 1xsjA 778 28.35 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 1ciyA 590 30.10 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1z6nA 167 33.88 c.47.1.1 124530 3bqpA 80 33.97 2cwlA 302 34.24 a.25.1.3 130927 2v6eA 558 36.39 2q52A 224 38.00 1yw0A 276 38.61 a.266.1.1 124126 1ubkL 534 38.97 e.18.1.1 88422 2ga9D 469 39.37 1fmjA 351 40.58 c.37.1.5 59879 1uby 367 42.91 1sf9A 128 43.75 b.34.15.1 98831 2qtzA 539 44.05 3cjnA 162 46.43 2rioA 434 49.96 1yoyA 175 53.87 a.211.1.1 123795 1oaoC 729 53.98 e.26.1.3 86746 1dmtA 696 54.12 d.92.1.4 40296 2d5vA 164 54.85 1g7oA 215 55.50 a.45.1.1,c.47.1.5 60332,60333 2di4A 238 56.08 a.269.1.1 131522 2hzmB 317 57.41 2oebA 155 59.76 1vjxA 157 59.95 a.25.1.1 100837 1yv5A 374 69.25 2tct 207 69.37 1vi9A 299 69.48 c.72.1.5 100750 1pq4A 291 69.51 c.92.2.2 94995 1ryt 190 70.06 1yuzA 202 70.68 a.25.1.1,g.41.5.1 124077,124078 1h2rL 534 71.78 e.18.1.1 43298 2fnaA 357 73.44 a.4.5.11,c.37.1.20 133809,133810 2f94F 350 73.67 1o0yA 260 73.74 c.1.10.1 80756 1rh5C 53 74.86 f.23.29.1 97466 2dq6A 870 75.52 2ewfA 610 77.97 1dpsA 167 78.41 a.25.1.1 16716 2itbA 206 78.55 1lkoA 191 79.43 a.25.1.1,g.41.5.1 78063,78064 1r53A 382 81.73 d.258.1.1 97063 3bmvA 683 83.16 1zunB 434 83.27 b.43.3.1,b.44.1.1,c.37.1.8 125677,125678,125679 1r1hA 696 85.99 d.92.1.4 104756 1g3mA 294 86.26 c.37.1.5 83268 1pbv 195 86.39 2pq7A 220 87.40 1ydeA 270 88.16 c.2.1.2 122980 2pexA 153 89.21