# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jk0A 419 1.62e-34 a.25.1.2 63142 1xsm 390 1.65e-34 1w68A 390 1.50e-33 a.25.1.2 109216 1syyA 346 6.29e-33 a.25.1.2 106126 1xikA 375 1.21e-32 a.25.1.2 16784 1mxrA 375 1.56e-32 a.25.1.2 85197 2rccA 346 2.09e-32 1kgnA 329 2.20e-31 a.25.1.2 68584 1jk0B 345 9.89e-31 a.25.1.2 63143 1r2fA 319 1.03e-30 a.25.1.2 16800 3chhA 336 3.20e-10 2jcdA 345 1.82e-08 2incA 491 8.28e-06 a.25.1.2 137524 2inpC 328 3.49e-05 2j2fA 363 7.69e-05 1mhyD 521 0.000163 a.25.1.2 16780 2uw1A 338 0.000199 1t0qA 498 0.000313 a.25.1.2 106220 1mtyB 384 0.000603 a.25.1.2 16740 2incB 322 0.000804 a.25.1.2 137525 1za0A 275 0.000875 a.25.1.2 124774 2inpA 494 0.001030 1t0qB 330 0.001878 a.25.1.2 106221 2oc5A 244 0.002903 1mtyD 512 0.004180 a.25.1.2 16742 1tyhA 248 0.01531 a.132.1.3 107458 1afrA 345 0.01749 a.25.1.2 16805 1oq9A 363 0.02040 a.25.1.2 87257 1mhyB 395 0.03324 a.25.1.2 16781 2qcxA 263 0.03599 1otkA 249 0.05901 a.25.1.2 93521 3bjdA 332 0.1259 2f2gA 221 0.1584 a.132.1.3 132816 1yakA 263 0.2016 a.132.1.3 122833 1rtwA 220 0.2630 a.132.1.3 97823 1otvA 259 0.2646 a.132.1.4 93526 1uddA 226 0.3270 a.132.1.3 107776 2a2mA 258 0.3866 a.132.1.3 126039 1z72A 225 0.4203 a.132.1.3 124583 2q4xA 221 0.4604 a.132.1.3 139880 1rcwA 231 0.7660 a.132.1.4 97299 2qzcA 214 0.7908 1oyzA 280 5.426 a.118.1.16 93775 2v8tA 302 6.167 1ciyA 590 12.54 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1o9iA 266 14.14 a.25.1.3 92671 1jkvA 266 14.22 a.25.1.3 71719 1jh6A 189 14.41 d.61.1.1 66707 1dmtA 696 15.29 d.92.1.4 40296 2cwlA 302 15.68 a.25.1.3 130927 3bfxA 296 16.15 2dvzA 314 16.77 1sf9A 128 17.25 b.34.15.1 98831 1yi8A 351 17.36 1pbv 195 17.51 1munA 225 17.66 a.96.1.2 18744 2d5vA 164 18.71 2cvzA 289 24.11 a.100.1.1,c.2.1.6 130890,130891 3bqpA 80 25.84 1z6nA 167 26.22 c.47.1.1 124530 1uby 367 27.30 2q52A 224 28.59 2dtr 226 28.64 2eh3A 179 30.09 1fmjA 351 30.78 c.37.1.5 59879 1o0yA 260 30.82 c.1.10.1 80756 1dt1A 129 33.04 a.3.1.1 15811 1mp8A 281 33.23 d.144.1.7 91384 1yhlA 362 37.34 1r1hA 696 37.72 d.92.1.4 104756 1rh5C 53 38.16 f.23.29.1 97466 2itbA 206 39.35 2g7gA 213 39.72 a.4.1.9,a.121.1.1 134732,134733 1j99A 293 41.31 c.37.1.5 71618 1h3oB 76 42.52 a.22.1.3 76645 2di4A 238 43.23 a.269.1.1 131522 3bmvA 683 44.17 2o3lA 85 46.24 1ic8A 194 46.28 a.4.1.1,a.35.1.1 76740,76741 2ex0A 399 46.63 c.87.1.9 132494 2b6cA 220 46.99 a.118.1.17 127983 1hm6A 346 48.84 a.65.1.1 18147 1nstA 325 48.97 c.37.1.5 31951 2pq7A 220 50.04 1epuA 591 51.30 e.25.1.1 43358 1ubkL 534 53.82 e.18.1.1 88422 2glcA 342 54.40 1zroA 602 58.22 a.264.1.1,a.264.1.1 125551,125552 2jhnA 295 59.02 2ewfA 610 59.55 2ga9D 469 60.33 1h2rL 534 60.78 e.18.1.1 43298 2f94F 350 61.81 1g8iA 190 62.41 a.39.1.5 60363 1zd1A 284 62.41 2nsaA 170 62.48 1m7sA 484 63.91 e.5.1.1 74574 2tct 207 64.72 1t06A 235 66.28 a.118.1.17 106194 1ciy 590 66.87 1qwlA 505 67.05 e.5.1.1 96483 1yoyA 175 67.80 a.211.1.1 123795 3cjnA 162 70.10 1yv5A 374 74.19 1wbeA 209 75.26 1dpsA 167 76.03 a.25.1.1 16716 3b40A 417 76.68 2h21A 440 77.47 a.166.1.1,b.85.7.3 135976,135977 1t8tA 271 77.70 c.37.1.5 106685 1vkjA 285 79.82 c.37.1.5 108666 2cihA 183 80.12 1ryt 190 80.25 2hvgA 482 81.96 1aba 87 82.10 1zp4A 304 84.19 1ls6A 295 86.01 c.37.1.5 91115 1hbq 183 86.35 2i3fA 224 86.62 2gz6A 388 89.84