# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jk0A 419 8.01e-35 a.25.1.2 63142 1xsm 390 9.44e-35 1w68A 390 8.55e-34 a.25.1.2 109216 1syyA 346 4.71e-33 a.25.1.2 106126 1xikA 375 8.80e-33 a.25.1.2 16784 2rccA 346 1.12e-32 1mxrA 375 2.00e-32 a.25.1.2 85197 1kgnA 329 1.32e-31 a.25.1.2 68584 1r2fA 319 5.30e-31 a.25.1.2 16800 1jk0B 345 5.96e-31 a.25.1.2 63143 3chhA 336 7.22e-10 2jcdA 345 4.64e-08 2incA 491 9.10e-06 a.25.1.2 137524 2inpC 328 5.17e-05 2j2fA 363 0.000174 2uw1A 338 0.000364 1t0qA 498 0.000408 a.25.1.2 106220 1mhyD 521 0.000557 a.25.1.2 16780 2inpA 494 0.000802 1za0A 275 0.001013 a.25.1.2 124774 1mtyB 384 0.001062 a.25.1.2 16740 2incB 322 0.001476 a.25.1.2 137525 1t0qB 330 0.002588 a.25.1.2 106221 2oc5A 244 0.006075 1mtyD 512 0.01029 a.25.1.2 16742 1tyhA 248 0.01834 a.132.1.3 107458 1afrA 345 0.02451 a.25.1.2 16805 1oq9A 363 0.02458 a.25.1.2 87257 1mhyB 395 0.03024 a.25.1.2 16781 2qcxA 263 0.04576 1otkA 249 0.1412 a.25.1.2 93521 1yakA 263 0.1541 a.132.1.3 122833 2f2gA 221 0.2751 a.132.1.3 132816 1rtwA 220 0.3283 a.132.1.3 97823 1uddA 226 0.3510 a.132.1.3 107776 3bjdA 332 0.4109 2a2mA 258 0.4704 a.132.1.3 126039 1rcwA 231 0.5272 a.132.1.4 97299 1z72A 225 0.6057 a.132.1.3 124583 2qzcA 214 0.6782 1otvA 259 0.9891 a.132.1.4 93526 2q4xA 221 1.052 a.132.1.3 139880 1oyzA 280 4.056 a.118.1.16 93775 2v8tA 302 8.396 1yi8A 351 8.778 1munA 225 9.446 a.96.1.2 18744 2dvzA 314 9.627 2glcA 342 12.06 1dmtA 696 12.99 d.92.1.4 40296 1dt1A 129 14.72 a.3.1.1 15811 2d5vA 164 14.80 2cwlA 302 15.12 a.25.1.3 130927 3bfxA 296 15.47 1o9iA 266 16.27 a.25.1.3 92671 2eh3A 179 16.62 1jkvA 266 16.77 a.25.1.3 71719 1ciyA 590 18.09 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1pbv 195 18.31 1sf9A 128 21.95 b.34.15.1 98831 1jh6A 189 23.40 d.61.1.1 66707 1mp8A 281 23.60 d.144.1.7 91384 2ewfA 610 26.01 2dtr 226 29.52 1j99A 293 30.63 c.37.1.5 71618 2di4A 238 32.64 a.269.1.1 131522 1g7oA 215 33.64 a.45.1.1,c.47.1.5 60332,60333 1z6nA 167 34.81 c.47.1.1 124530 1fmjA 351 36.54 c.37.1.5 59879 1hm6A 346 38.19 a.65.1.1 18147 1dpsA 167 40.10 a.25.1.1 16716 2ex0A 399 40.12 c.87.1.9 132494 1r1hA 696 41.41 d.92.1.4 104756 1ic8A 194 42.67 a.4.1.1,a.35.1.1 76740,76741 1rh5C 53 43.77 f.23.29.1 97466 2itbA 206 45.68 3bmvA 683 46.00 1o0yA 260 47.62 c.1.10.1 80756 2jhnA 295 47.99 2tct 207 48.44 1jt6A 188 48.58 a.4.1.9,a.121.1.1 67247,67248 1loxA 662 51.53 a.119.1.2,b.12.1.1 19238,23638 2g7gA 213 52.18 a.4.1.9,a.121.1.1 134732,134733 2o3lA 85 53.95 1vi9A 299 54.39 c.72.1.5 100750 1zunB 434 55.12 b.43.3.1,b.44.1.1,c.37.1.8 125677,125678,125679 1g8iA 190 55.88 a.39.1.5 60363 2b6cA 220 57.48 a.118.1.17 127983 1bgfA 124 57.96 a.90.1.1 18537 1ls6A 295 58.28 c.37.1.5 91115 1m7sA 484 59.52 e.5.1.1 74574 2q52A 224 60.05 2fnaA 357 60.52 a.4.5.11,c.37.1.20 133809,133810 1uby 367 60.55 1ofcX 304 61.33 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1qwlA 505 68.60 e.5.1.1 96483 2g7lA 243 70.10 a.4.1.9,a.121.1.1 134734,134735 2pq7A 220 70.27 1yv5A 374 70.66 3bqpA 80 74.10 2rdpA 150 75.08 3cjnA 162 77.37 1t06A 235 77.50 a.118.1.17 106194 1zroA 602 78.15 a.264.1.1,a.264.1.1 125551,125552 2nsaA 170 78.17 2ga9D 469 78.41 1zd1A 284 78.91 1h3oB 76 79.21 a.22.1.3 76645 2cvzA 289 81.76 a.100.1.1,c.2.1.6 130890,130891 2hzmA 212 81.90 1hbq 183 82.55 3bmaA 407 84.45 2qq9A 226 85.03 1bgf 124 85.31 2okcA 445 85.58 1vz0A 230 86.05 a.4.14.1,d.268.1.1 108929,108930 1vyrA 364 87.37 c.1.4.1 108906 1wpbA 172 87.67 a.233.1.1 114783 2qf9A 179 88.25 2f94F 350 88.63 3b40A 417 89.55