# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1xsm 390 1.86e-36 1jk0A 419 2.04e-35 a.25.1.2 63142 1w68A 390 6.77e-35 a.25.1.2 109216 1syyA 346 2.10e-34 a.25.1.2 106126 1xikA 375 1.05e-33 a.25.1.2 16784 1mxrA 375 3.91e-33 a.25.1.2 85197 1kgnA 329 1.27e-32 a.25.1.2 68584 2rccA 346 3.04e-32 1r2fA 319 7.07e-32 a.25.1.2 16800 1jk0B 345 4.50e-31 a.25.1.2 63143 3chhA 336 1.20e-10 2jcdA 345 9.05e-09 2inpC 328 2.27e-06 2incB 322 5.82e-06 a.25.1.2 137525 1t0qB 330 2.33e-05 a.25.1.2 106221 1mtyB 384 4.89e-05 a.25.1.2 16740 1mhyB 395 8.43e-05 a.25.1.2 16781 1za0A 275 0.000380 a.25.1.2 124774 2j2fA 363 0.000429 2uw1A 338 0.001138 2incA 491 0.006838 a.25.1.2 137524 2oc5A 244 0.009047 2a2mA 258 0.04908 a.132.1.3 126039 1t0qA 498 0.05607 a.25.1.2 106220 1otkA 249 0.06026 a.25.1.2 93521 2f2gA 221 0.2608 a.132.1.3 132816 1z72A 225 0.2857 a.132.1.3 124583 1afrA 345 0.3112 a.25.1.2 16805 1oq9A 363 0.3200 a.25.1.2 87257 2qzcA 214 0.3230 1rtwA 220 0.3327 a.132.1.3 97823 1yakA 263 0.3377 a.132.1.3 122833 2qcxA 263 0.7215 1mhyD 521 0.8729 a.25.1.2 16780 1tyhA 248 0.9436 a.132.1.3 107458 2inpA 494 0.9558 1uddA 226 1.356 a.132.1.3 107776 1rcwA 231 1.402 a.132.1.4 97299 1gtmA 419 1.750 c.2.1.7,c.58.1.1 30223,33871 1mtyD 512 2.092 a.25.1.2 16742 1otvA 259 2.434 a.132.1.4 93526 2bmaA 470 3.683 1yuzA 202 4.703 a.25.1.1,g.41.5.1 124077,124078 2q4xA 221 6.512 a.132.1.3 139880 1dmtA 696 6.548 d.92.1.4 40296 2glcA 342 11.22 1gjwA 637 14.45 b.71.1.1,c.1.8.1 60582,60583 1oyzA 280 19.31 a.118.1.16 93775 3bjdA 332 19.90 2qgmA 445 22.69 1mwmA 320 24.51 c.55.1.1,c.55.1.1 79580,79581 2aclB 244 27.28 2di4A 238 27.62 a.269.1.1 131522 1g3mA 294 28.90 c.37.1.5 83268 1nu7D 282 30.19 a.8.6.1,a.8.6.1 92191,92192 1dpsA 167 30.98 a.25.1.1 16716 1upvA 257 32.64 a.123.1.1 113398 1hrdA 449 33.42 c.2.1.7,c.58.1.1 30219,33867 1pq4A 291 38.63 c.92.2.2 94995 1t3tA 1303 39.73 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1t8tA 271 41.89 c.37.1.5 106685 1zrhA 274 46.38 1s9pA 227 50.70 a.123.1.1 105384 1pv9A 348 54.29 c.55.2.1,d.127.1.1 95157,95158 2qtzA 539 56.09 3clqA 421 58.64 1aquA 297 59.53 c.37.1.5 31942 1txkA 498 61.52 b.1.18.2,b.30.5.9 107425,107426 1r1hA 696 62.03 d.92.1.4 104756 1sf9A 128 62.20 b.34.15.1 98831 2a1dD 329 63.07 1io7A 368 63.55 a.104.1.1 18971 2ez2A 456 64.31 2ga9D 469 65.29 1wy2A 351 65.86 1xvlA 321 66.59 c.92.2.2 122380 3bfxA 296 67.42 1fjhA 257 68.50 c.2.1.2 29870 2ckfA 454 68.96 2debA 653 70.54 1gbg 214 72.25 1n83A 270 75.51 a.123.1.1 80276 2h4tA 626 75.87 1tyfA 193 77.22 c.14.1.1 30885 1wpbA 172 77.49 a.233.1.1 114783 2ivxA 257 80.53 3bqpA 80 84.97 1gtkA 313 86.26 c.94.1.1,d.50.2.1 76346,76347 1t1uA 639 87.12 c.43.1.3,c.43.1.3 119110,119111 1bgvA 449 89.28 c.2.1.7,c.58.1.1 30217,33865