# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1xsm 390 2.70e-37 1jk0A 419 1.07e-36 a.25.1.2 63142 1w68A 390 8.27e-36 a.25.1.2 109216 1syyA 346 4.52e-35 a.25.1.2 106126 1xikA 375 1.23e-34 a.25.1.2 16784 1mxrA 375 2.41e-34 a.25.1.2 85197 2rccA 346 9.43e-34 1kgnA 329 2.37e-33 a.25.1.2 68584 1jk0B 345 8.29e-33 a.25.1.2 63143 1r2fA 319 1.72e-32 a.25.1.2 16800 3chhA 336 6.37e-11 2jcdA 345 4.99e-09 2inpC 328 3.94e-05 2incA 491 0.000113 a.25.1.2 137524 1za0A 275 0.000250 a.25.1.2 124774 1mtyB 384 0.000836 a.25.1.2 16740 2j2fA 363 0.001034 2incB 322 0.001098 a.25.1.2 137525 2oc5A 244 0.001643 1t0qB 330 0.001978 a.25.1.2 106221 1t0qA 498 0.003977 a.25.1.2 106220 1mhyB 395 0.008568 a.25.1.2 16781 2uw1A 338 0.01333 2inpA 494 0.03617 1tyhA 248 0.07853 a.132.1.3 107458 1rtwA 220 0.09385 a.132.1.3 97823 1mhyD 521 0.1181 a.25.1.2 16780 2qcxA 263 0.1424 1rcwA 231 0.1514 a.132.1.4 97299 1uddA 226 0.1931 a.132.1.3 107776 2a2mA 258 0.1948 a.132.1.3 126039 2qzcA 214 0.2016 1otvA 259 0.2151 a.132.1.4 93526 2f2gA 221 0.3191 a.132.1.3 132816 1yakA 263 0.5366 a.132.1.3 122833 1mtyD 512 0.5477 a.25.1.2 16742 1z72A 225 0.5813 a.132.1.3 124583 1oq9A 363 0.8048 a.25.1.2 87257 1afrA 345 0.8975 a.25.1.2 16805 1otkA 249 1.466 a.25.1.2 93521 3bjdA 332 1.502 2q4xA 221 1.884 a.132.1.3 139880 1r6fA 310 3.879 e.46.1.1 97149 1yuzA 202 4.804 a.25.1.1,g.41.5.1 124077,124078 1ic8A 194 9.121 a.4.1.1,a.35.1.1 76740,76741 1dmtA 696 10.60 d.92.1.4 40296 1wpbA 172 10.73 a.233.1.1 114783 2hzmB 317 12.83 3bqpA 80 15.52 1oyzA 280 22.23 a.118.1.16 93775 2dtr 226 22.49 2v6eA 558 23.35 1tyfA 193 23.84 c.14.1.1 30885 1pq4A 291 25.69 c.92.2.2 94995 1ak5 503 26.08 1t06A 235 27.84 a.118.1.17 106194 2glcA 342 28.19 1o9iA 266 31.65 a.25.1.3 92671 1sf9A 128 31.80 b.34.15.1 98831 1jkvA 266 34.61 a.25.1.3 71719 2bmaA 470 34.78 2ga9D 469 39.44 1s9pA 227 39.81 a.123.1.1 105384 1r1hA 696 42.25 d.92.1.4 104756 1t3tA 1303 43.27 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1gjwA 637 45.98 b.71.1.1,c.1.8.1 60582,60583 2ex0A 399 46.99 c.87.1.9 132494 2e8vA 340 49.94 2h5nA 133 53.12 1rttA 193 58.18 c.23.5.4 105098 1dnpA 471 60.17 a.99.1.1,c.28.1.1 18775,31630 1gtmA 419 61.62 c.2.1.7,c.58.1.1 30223,33871 2dobA 83 61.92 1sqgA 429 62.31 a.79.1.3,c.66.1.38 105912,105913 1vplA 256 62.55 c.37.1.12 113966 1qwlA 505 63.69 e.5.1.1 96483 1s1mA 545 67.72 c.23.16.1,c.37.1.10 105201,105202 1pq9A 253 67.93 a.123.1.1 95004 1kyfA 247 70.21 b.1.10.1,d.105.1.1 73220,73221 1nq7A 244 71.89 a.123.1.1 92047 2v8tA 302 72.10 1gk9B 557 72.91 1thgA 544 73.78 c.69.1.17 34763 2qgmA 445 76.57 1zrhA 274 76.68 1qtsA 247 78.68 b.1.10.1,d.105.1.1 22313,40789 3cetA 334 79.24 1upvA 257 79.60 a.123.1.1 113398 2d5vA 164 79.68 2di4A 238 79.99 a.269.1.1 131522 1qjbA 245 81.83 a.118.7.1 19202 2p3xA 339 82.74 1w1kA 560 84.88 d.58.32.1,d.145.1.1 109059,109060 2j7yA 255 86.18 a.123.1.1 138130 2hq7A 146 86.56 b.45.1.1 136657 2qq9A 226 86.84 1w99A 558 88.06 2itbA 206 88.16 1ux5A 411 89.85 a.207.1.1 100144