# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1xsm 390 2.12e-21 1w68A 390 5.04e-20 a.25.1.2 109216 1mxrA 375 8.84e-20 a.25.1.2 85197 1jk0A 419 2.75e-19 a.25.1.2 63142 1xikA 375 3.58e-19 a.25.1.2 16784 1syyA 346 6.10e-19 a.25.1.2 106126 1r2fA 319 7.42e-19 a.25.1.2 16800 1kgnA 329 7.97e-19 a.25.1.2 68584 2rccA 346 8.31e-19 1jk0B 345 1.47e-15 a.25.1.2 63143 2inpC 328 0.005766 1rcwA 231 0.006212 a.132.1.4 97299 3chhA 336 0.007564 2jcdA 345 0.008433 1mhyB 395 0.2126 a.25.1.2 16781 2oc5A 244 0.6708 2incA 491 0.6840 a.25.1.2 137524 2a2mA 258 0.6942 a.132.1.3 126039 1uddA 226 0.8187 a.132.1.3 107776 1t0qB 330 1.006 a.25.1.2 106221 2incB 322 1.082 a.25.1.2 137525 1za0A 275 1.686 a.25.1.2 124774 2qzcA 214 2.126 1mtyB 384 2.620 a.25.1.2 16740 1tyhA 248 3.169 a.132.1.3 107458 1yakA 263 3.429 a.132.1.3 122833 2f2gA 221 3.655 a.132.1.3 132816 1t0qA 498 4.146 a.25.1.2 106220 1otvA 259 5.172 a.132.1.4 93526 1z72A 225 6.483 a.132.1.3 124583 1ggzA 148 6.780 a.39.1.5 70176 1fvkA 189 8.112 c.47.1.13 90351 2qcxA 263 11.68 1bedA 181 12.15 c.47.1.13 90330 2f3yA 148 13.62 2o5gA 148 13.90 1acvA 189 15.75 c.47.1.13 90328 1yyaA 250 16.42 1qe3A 489 20.67 c.69.1.1 34630 1c1dA 355 22.99 c.2.1.7,c.58.1.1 30270,33918 1vlpA 441 23.04 d.41.2.2,c.1.17.2 108840,108841 1qwgA 251 23.30 c.1.27.1 96473 2hpsA 186 23.55 2i4iA 417 23.93 2q4xA 221 26.47 a.132.1.3 139880 2uuuA 584 27.40 2obhA 143 28.16 1exrA 148 30.37 a.39.1.5 17299 1ldg 316 30.63 1jv1A 505 31.00 c.68.1.5 71892 1wy2A 351 31.19 2c1mA 424 33.35 1v33A 366 33.83 d.264.1.1 100278 3b5oA 244 36.12 1rtwA 220 36.31 a.132.1.3 97823 2gnoA 305 37.47 a.80.1.1,c.37.1.20 135414,135415 1vz0A 230 38.41 a.4.14.1,d.268.1.1 108929,108930 2inpA 494 38.81 1x3mA 415 39.66 c.55.1.2,c.55.1.2 121664,121665 1or4A 178 39.86 a.1.1.2 93447 2zg5A 397 40.10 1sl8A 191 40.41 a.39.1.5 112099 1auiB 169 41.87 a.39.1.5 17325 2h4tA 626 44.83 2gxqA 207 46.17 2pl3A 236 46.33 1i6lA 328 47.08 c.26.1.1 66041 2i7gA 376 51.83 2ifaA 208 51.89 d.90.1.1 137329 1stzA 338 52.19 a.4.5.51,d.110.2.3 106009,106010 1qz9A 416 52.94 c.67.1.3 96621 2gxgA 146 57.55 2nogA 173 57.80 3cjnA 162 57.94 1td2A 287 58.66 c.72.1.5 106765 2h5xA 196 58.97 1vi9A 299 60.06 c.72.1.5 100750 1eluA 390 61.13 c.67.1.3 34434 1wdcB 156 61.81 a.39.1.5 17302 1d2fA 390 62.15 c.67.1.3 34411 2ethA 154 63.97 a.4.5.28 132358 2di3A 239 64.01 1jjvA 206 64.49 c.37.1.1 71698 1xo5A 183 65.49 a.39.1.5 115680 2aaoA 166 66.30 2nq5A 755 68.16 1ub0A 258 68.73 c.72.1.2 88394 2sas 185 68.84 2qacA 146 68.95 2p0tA 176 69.36 2i49A 429 69.40 1n55A 251 69.53 c.1.1.1 80007 1wn1A 356 69.66 2g6tA 306 69.79 c.147.1.1 134717 1vqoP 149 70.62 a.94.1.1 120377 1rt8A 513 71.14 a.40.1.1 105095 1urvA 190 71.30 a.1.1.2 113414 2zfdA 226 71.49 1vm8A 534 73.77 c.68.1.5 113670 2yqcA 486 73.81 1ie9A 259 75.66 a.123.1.1 62318 2oifA 162 76.52 1lehA 364 77.16 c.2.1.7,c.58.1.1 30268,33916 1jr2A 286 77.64 c.113.1.1 67111 1wkbA 810 78.78 3broA 141 79.40 2b5eA 504 79.60 c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2 127888,127889,127890,127891 1o08A 221 79.89 c.108.1.6 86525 2rdpA 150 81.30 1l3lA 234 81.81 a.4.6.2,d.110.5.1 73541,73542 1d2rA 326 82.83 c.26.1.1 31572 1rwyA 109 83.54 a.39.1.4 98002 1peqA 714 84.20 a.98.1.1,c.7.1.2 104131,104132 2oz8A 389 85.43 1jakA 512 85.51 c.1.8.6,d.92.2.1 66472,66473 1pvaA 110 86.90 a.39.1.4 17207 1pv9A 348 86.98 c.55.2.1,d.127.1.1 95157,95158 2hr3A 147 87.58 a.4.5.28 136678 2j2fA 363 87.70 1khtA 192 87.95 c.37.1.1 84401 1topA 162 88.46 a.39.1.5 17223 1a2xA 159 88.64 a.39.1.5 17251 1mhyD 521 88.96 a.25.1.2 16780 2ct9A 208 89.75 2ccmA 191 89.78