# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o98A 510 4.177e-01 c.105.1.1 86684 c.76.1.3 86685 1a70A 98 1.469e+00 d.15.4.1 37678 1doiA 129 1.666e+00 d.15.4.1 37676 1awdA 95 1.834e+00 d.15.4.1 37673 1frdA 99 2.042e+00 d.15.4.1 37648 1tfb 207 2.397e+00 1tfb 1lvaA 259 2.946e+00 a.4.5.35 74276 a.4.5.35 74277 a.4.5.35 74278 a.4.5.35 74279 1c9bA 208 3.162e+00 1tfb a.74.1.2 18372 a.74.1.2 18373 1frrA 96 3.840e+00 1awd d.15.4.1 37674 1fxiA 97 4.236e+00 1awd d.15.4.1 37664 1wg8A 282 4.566e+00 a.60.13.1 114605 c.66.1.23 114606 3cqyA 371 4.716e+00 2hs1A 100 4.763e+00 1d3uB 202 5.294e+00 1aisB a.74.1.2 18386 a.74.1.2 18387 2pheC 27 5.385e+00 1gmlA 155 5.743e+00 c.8.5.2 70273 1aisB 194 6.648e+00 1aisB a.74.1.2 18384 a.74.1.2 18385 1k7cA 234 7.257e+00 c.23.10.4 68267 1jy1A 440 7.300e+00 d.136.1.3 67438 d.136.1.3 67439 1zh1A 164 8.687e+00 2ghsA 296 9.110e+00 b.68.6.1 135209 1h5wA 250 1.003e+01 e.27.1.1 65635 1q32A 420 1.017e+01 d.136.1.3 104507 d.136.1.3 104508 1wriA 94 1.054e+01 d.15.4.1 114838 1iueA 99 1.201e+01 d.15.4.1 90697 2g23A 588 1.257e+01 1czpA 99 1.286e+01 1awd d.15.4.1 37645 3brnA 154 1.327e+01 1wa8A 100 1.403e+01 a.25.3.1 120809 1offA 96 1.421e+01 d.15.4.1 86947 1nt4A 392 1.424e+01 c.60.1.2 92102 2tct 199 1.680e+01 2tct 1d4xA 369 1.699e+01 1yagA c.55.1.1 59107 c.55.1.1 59108 2gpzA 111 1.716e+01 1oh0A 126 1.774e+01 d.17.4.3 87004 1volA 205 1.791e+01 1tfb a.74.1.2 18370 a.74.1.2 18371 1xniA 119 1.856e+01 b.34.9.1 115582 b.34.9.1 115583 1rqlA 258 1.987e+01 c.108.1.3 97750 1ssfA 124 2.004e+01 b.34.9.1 105982 b.34.9.1 105983 1qz5A 360 2.063e+01 c.55.1.1 96614 c.55.1.1 96615 2vchA 462 2.183e+01 1h70A 256 2.218e+01 1h70A d.126.1.3 60711 1w0hA 201 2.222e+01 c.55.3.5 114064 1rfkA 96 2.235e+01 1tw7A 100 2.329e+01 2cx7A 130 2.443e+01 1ds1A 324 2.601e+01 1drtA b.82.2.2 28127 2rmcA 183 2.672e+01 2cpl b.62.1.1 27491 1qksA 560 2.679e+01 1qksA a.3.1.2 15951 b.70.2.1 27710 1awqA 165 2.691e+01 2cpl b.62.1.1 27461 1dvoA 153 2.703e+01 1dvoA a.136.1.1 19623 2c7pA 328 2.704e+01 c.66.1.26 130080 1fr2A 84 2.794e+01 a.28.2.1 83256 2guiA 177 2.834e+01 c.55.3.5 135737 1wuaA 359 2.868e+01 c.55.1.1 121281 c.55.1.1 121282 2p1jA 165 2.905e+01 1q3qA 519 2.942e+01 a.129.1.2 95704 c.8.5.2 95705 d.56.1.2 95706 1emvA 84 2.958e+01 1cei a.28.2.1 16944 1kdjA 103 3.073e+01 b.6.1.1 22864 1dkqA 411 3.149e+01 1dklA c.60.1.2 33998 2bitX 165 3.247e+01 b.62.1.1 128590 2a9gA 406 3.298e+01 d.126.1.4 126435 1j53A 175 3.517e+01 c.55.3.5 77076 1l1oC 174 3.726e+01 b.40.4.3 73480 2j9uB 48 3.769e+01 2hc0A 100 3.785e+01 1ass 153 3.913e+01 1a6dA 1va0A 222 3.948e+01 c.90.1.1 119899