PFRMAT SS
TARGET T0443
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0443.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 56
METHOD
MODEL 1
M C 0.790
Q C 0.869
P C 0.826
E H 0.860
T H 0.935
S H 0.984
A H 0.997
Q H 0.998
Y H 0.997
Q H 0.999
H H 0.999
R H 0.999
F H 0.999
S H 0.998
Q H 0.994
A H 0.978
I H 0.950
R H 0.879
G T 0.363
G T 0.478
E T 0.541
A T 0.593
A T 0.646
D T 0.703
G T 0.683
L T 0.560
P H 0.386
Q H 0.685
D H 0.769
R H 0.817
L H 0.919
N H 0.939
V H 0.905
Y H 0.949
I H 0.963
R H 0.955
L H 0.926
I H 0.945
R H 0.969
N H 0.975
N H 0.957
I H 0.988
H H 0.991
S H 0.989
F H 0.983
I H 0.974
D H 0.957
R H 0.908
C H 0.615
Y C 0.562
T H 0.520
E H 0.458
T G 0.462
R G 0.527
Q G 0.454
Y T 0.395
F C 0.455
D C 0.717
S H 0.918
K H 0.936
E H 0.944
W H 0.983
S H 0.988
R H 0.987
L H 0.974
K H 0.994
E H 0.996
G H 0.994
F H 0.991
V H 0.975
R H 0.967
D H 0.911
A H 0.397
R T 0.437
A T 0.507
Q T 0.426
T C 0.564
P H 0.796
Y H 0.896
F H 0.965
Q H 0.980
E H 0.984
I H 0.985
P H 0.984
G H 0.989
E H 0.992
F H 0.996
L H 0.982
Q H 0.979
Y H 0.969
C H 0.969
Q H 0.928
S H 0.616
P C 0.507
P C 0.535
L C 0.561
S C 0.522
D H 0.678
G H 0.807
I H 0.913
L H 0.945
A H 0.951
L H 0.936
M H 0.938
D H 0.894
F H 0.894
E H 0.864
Y H 0.891
T H 0.913
Q H 0.934
L H 0.879
L H 0.758
A H 0.574
E E 0.473
V E 0.435
A E 0.333
Q C 0.345
I C 0.461
P C 0.580
D C 0.616
I C 0.640
P C 0.538
D C 0.555
I T 0.370
H T 0.384
Y T 0.404
S T 0.498
N T 0.529
D T 0.571
S T 0.467
K C 0.517
Y C 0.384
T C 0.457
P C 0.526
S C 0.585
P H 0.680
A H 0.689
A H 0.616
F H 0.669
I H 0.698
R H 0.775
Q H 0.652
Y C 0.374
R C 0.592
Y C 0.454
D E 0.552
V E 0.736
T E 0.736
H E 0.718
D E 0.463
L C 0.414
Q T 0.578
E T 0.482
A T 0.438
E C 0.666
T E 0.728
A E 0.941
L E 0.981
L E 0.986
I E 0.981
W E 0.946
R E 0.835
N T 0.570
A T 0.947
E T 0.956
D T 0.901
D E 0.460
V E 0.872
M E 0.918
Y E 0.926
Q E 0.853
T E 0.670
L C 0.517
D C 0.675
G H 0.947
F H 0.977
D H 0.991
M H 0.998
M H 0.998
L H 0.998
L H 0.995
E H 0.989
I H 0.992
M H 0.984
G H 0.916
S H 0.780
S H 0.440
A H 0.439
L H 0.417
S H 0.429
F H 0.560
D H 0.743
T H 0.861
L H 0.913
A H 0.949
Q H 0.959
T H 0.960
L H 0.956
V H 0.931
E H 0.913
F H 0.875
M H 0.613
P H 0.535
K H 0.478
A H 0.424
D H 0.425
N C 0.573
W H 0.906
K H 0.930
N H 0.911
I H 0.934
L H 0.927
L H 0.937
G H 0.890
K H 0.862
W H 0.873
S H 0.896
G H 0.778
W H 0.723
I H 0.607
E H 0.623
Q H 0.553
R H 0.412
I E 0.425
I E 0.385
I T 0.348
P T 0.547
S T 0.648
L T 0.557
S T 0.319
A T 0.298
I T 0.335
S T 0.455
E T 0.469
N T 0.488
M T 0.655
E T 0.704
G T 0.749
N T 0.695
S T 0.519
P T 0.382
S T 0.365
Q T 0.429
N T 0.369
H C 0.371
L C 0.570
S C 0.783
A C 0.950
END