PFRMAT SS TARGET T0443 AUTHOR SAM-T02-server METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 7 (1 EBGHSTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0443.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 56 METHOD MODEL 1 M C 0.999 Q C 0.975 P C 0.789 E H 0.439 T H 0.457 S H 0.747 A H 0.897 Q H 0.944 Y H 0.967 Q H 0.984 H H 0.989 R H 0.988 F H 0.988 S H 0.978 Q H 0.945 A H 0.917 I H 0.846 R H 0.579 G C 0.433 G C 0.479 E C 0.506 A C 0.592 A C 0.703 D T 0.504 G T 0.460 L C 0.655 P C 0.427 Q H 0.873 D H 0.914 R H 0.975 L H 0.990 N H 0.994 V H 0.995 Y H 0.995 I H 0.994 R H 0.991 L H 0.974 I H 0.957 R H 0.904 N H 0.787 N H 0.773 I H 0.911 H H 0.898 S H 0.889 F H 0.902 I H 0.880 D H 0.786 R H 0.724 C H 0.743 Y H 0.718 T H 0.774 E H 0.771 T H 0.713 R G 0.436 Q H 0.405 Y G 0.407 F S 0.414 D C 0.780 S H 0.708 K H 0.869 E H 0.913 W H 0.967 S H 0.978 R H 0.982 L H 0.979 K H 0.981 E H 0.983 G H 0.978 F H 0.974 V H 0.958 R H 0.883 D H 0.654 A T 0.282 R T 0.376 A C 0.610 Q C 0.422 T S 0.616 P H 0.423 Y H 0.433 F H 0.586 Q H 0.682 E H 0.672 I H 0.816 P H 0.941 G H 0.961 E H 0.974 F H 0.989 L H 0.988 Q H 0.979 Y H 0.953 C H 0.864 Q H 0.689 S H 0.357 P T 0.339 P C 0.346 L C 0.678 S C 0.712 D H 0.790 G H 0.833 I H 0.957 L H 0.974 A H 0.966 L H 0.971 M H 0.971 D H 0.943 F H 0.964 E H 0.976 Y H 0.978 T H 0.976 Q H 0.972 L H 0.953 L H 0.948 A H 0.903 E H 0.851 V H 0.712 A H 0.508 Q H 0.269 I C 0.398 P C 0.477 D C 0.594 I C 0.790 P C 0.866 D C 0.745 I C 0.397 H T 0.286 Y C 0.294 S C 0.275 N T 0.311 D T 0.319 S C 0.375 K C 0.462 Y C 0.398 T C 0.457 P C 0.428 S C 0.827 P H 0.691 A H 0.814 A H 0.768 F H 0.770 I H 0.606 R H 0.512 Q H 0.523 Y C 0.309 R C 0.670 Y C 0.792 D C 0.591 V C 0.415 T E 0.535 H E 0.389 D C 0.375 L C 0.605 Q T 0.371 E S 0.457 A S 0.694 E C 0.785 T E 0.618 A E 0.958 L E 0.988 L E 0.995 I E 0.991 W E 0.959 R E 0.779 N C 0.590 A T 0.562 E T 0.733 D S 0.353 D E 0.407 V E 0.802 M E 0.827 Y E 0.761 Q E 0.767 T E 0.559 L C 0.673 D C 0.891 G H 0.909 F H 0.933 D H 0.970 M H 0.989 M H 0.982 L H 0.982 L H 0.977 E H 0.949 I H 0.911 M H 0.841 G H 0.752 S H 0.599 S H 0.415 A T 0.337 L C 0.276 S H 0.346 F H 0.576 D H 0.805 T H 0.885 L H 0.944 A H 0.968 Q H 0.975 T H 0.973 L H 0.968 V H 0.958 E H 0.863 F H 0.694 M H 0.522 P H 0.341 K H 0.331 A H 0.319 D H 0.362 N H 0.486 W H 0.767 K H 0.919 N H 0.956 I H 0.971 L H 0.963 L H 0.938 G H 0.901 K H 0.871 W H 0.833 S H 0.790 G H 0.784 W H 0.660 I H 0.570 E H 0.572 Q H 0.496 R E 0.383 I E 0.519 I E 0.488 I C 0.466 P T 0.322 S T 0.344 L C 0.451 S C 0.555 A C 0.347 I C 0.319 S C 0.337 E T 0.526 N T 0.553 M C 0.558 E T 0.362 G T 0.407 N S 0.515 S C 0.657 P C 0.380 S C 0.324 Q H 0.305 N H 0.424 H H 0.316 L H 0.230 S C 0.291 A H 0.416 END