# List of top-scoring protein chains for t2k.100-30-str hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1j53A 186 3.74e-02 c.55.3.5 77076 1j54A 186 3.76e-02 c.55.3.5 77077 2guiA 194 3.80e-02 c.55.3.5 135737 2uxuA 210 1.23e-01 1iurA 88 2.36e-01 a.2.3.1 90704 2dbbA 151 3.23e-01 2f7tA 227 6.20e-01 1z63A 500 7.64e-01 c.37.1.19 124502 c.37.1.19 124503 1s9aA 257 8.13e-01 b.3.6.1 105379 1ktjA 129 1.26e+00 b.1.18.7 72974 1z5zA 271 1.38e+00 c.37.1.19 124499 1omwA 689 1.90e+00 a.91.1.1 87086 b.55.1.1 87087 d.144.1.7 87088 2plrA 213 1.94e+00 1j6rA 214 2.21e+00 d.173.1.2 71598 2os0A 188 2.25e+00 1wsuA 124 2.63e+00 a.4.5.35 121245 a.4.5.35 121246 2f2uA 402 3.40e+00 2boqA 331 3.48e+00 1xwvA 129 3.72e+00 b.1.18.7 116134 1ktzB 122 4.06e+00 g.7.1.3 68868 2i51A 195 4.51e+00 1v3yA 192 4.55e+00 d.167.1.1 113508 2q4fA 149 4.60e+00 a.24.10.2 139847 1m9zA 111 4.76e+00 g.7.1.3 78881 1tv8A 340 4.87e+00 c.1.28.3 107352 1yviA 149 4.90e+00 a.24.10.2 124099 1nrjA 158 5.05e+00 d.110.4.4 86124 1fxxA 482 5.12e+00 1fxxA c.55.3.5 33726 2v3aA 384 5.13e+00 1i1gA 141 5.19e+00 a.4.5.32 65982 d.58.4.2 65983 1lmeA 176 5.28e+00 d.167.1.1 84629 2ew5A 181 5.28e+00 1r7lA 110 5.37e+00 d.277.1.1 104837 2i6eA 301 6.65e+00 1kqfC 217 6.77e+00 f.21.1.1 72874 3sdhA 146 6.85e+00 3sdhA a.1.1.2 14984 1ri7A 171 7.03e+00 a.4.5.32 97504 d.58.4.2 97505 2ov7A 137 7.16e+00 2igtA 332 7.23e+00 c.66.1.51 137401 1g87A 614 7.34e+00 a.102.1.2 83275 b.2.2.2 83276 2pn6A 150 7.40e+00 2z8aA 146 7.50e+00 2ia0A 171 7.80e+00 487dH 224 8.07e+00 1ad2 i.1.1.2 45835 2e7xA 150 8.07e+00 1ad2A 228 8.14e+00 e.24.1.1 43353 2h4pB 34 8.33e+00 1hleB 31 8.35e+00 1hleB 2qz8A 149 8.56e+00 2qxfA 482 8.68e+00 1db2A 377 8.95e+00 1sek e.1.1.1 42672 2glzA 153 9.02e+00 d.81.3.1 135348 2cg4A 152 9.37e+00 a.4.5.32 130417 d.58.4.2 130418 1f4tA 368 9.37e+00 1f4tA a.104.1.1 18973 2cfxA 144 9.62e+00 a.4.5.32 130395 d.58.4.2 130396 2fb2A 340 9.96e+00 3bhwA 209 1.01e+01 1wdxA 69 1.04e+01 2hp7A 183 1.07e+01 1lvaA 258 1.10e+01 a.4.5.35 74276 a.4.5.35 74277 a.4.5.35 74278 a.4.5.35 74279 2booA 247 1.14e+01 2oo2A 86 1.15e+01 2ckfB 174 1.16e+01 1lnwA 147 1.17e+01 a.4.5.28 78104 2cyyA 151 1.17e+01 a.4.5.32 131028 d.58.4.2 131029 1tg0A 68 1.18e+01 2ivmA 150 1.23e+01 1s9rA 410 1.24e+01 d.126.1.4 98758 1yd0A 96 1.28e+01 1iq9A 61 1.35e+01 g.7.1.1 90669 2gviA 204 1.38e+01 2oztA 332 1.38e+01 1np7A 489 1.39e+01 a.99.1.1 80677 c.28.1.1 80678 3bhyA 283 1.42e+01 1dm1A 146 1.42e+01 2fal a.1.1.2 15153 2ejwA 332 1.43e+01 2cblA 305 1.45e+01 2cblA a.39.1.7 17380 a.48.1.1 17774 d.93.1.1 40528 1lxyA 409 1.46e+01 d.126.1.4 91154 1yovA 537 1.47e+01 c.111.1.2 123785 2hthB 140 1.49e+01 b.55.1.12 136743 2p5vA 162 1.50e+01 2govA 195 1.50e+01 d.60.1.4 135447 1zkrA 153 1.53e+01 a.101.1.1 125209 a.101.1.1 125210 2ejnA 153 1.54e+01 a.101.1.1 132279 a.101.1.1 132280 1h97A 147 1.57e+01 1h97A a.1.1.2 60812 1guzA 310 1.57e+01 c.2.1.5 65586 d.162.1.1 65587 1u5tB 169 1.57e+01 a.4.5.54 107686 a.4.5.54 107687 2dtcA 126 1.57e+01 1x2gA 337 1.61e+01 2qtdA 105 1.64e+01 2hnhA 910 1.65e+01 1mbaA 146 1.67e+01 a.1.1.2 15149 2ejxA 139 1.67e+01 1mba 147 1.67e+01 2fal 1bqnB 430 1.68e+01 1rthA e.8.1.2 43065 1b85A 351 1.70e+01 1arv a.93.1.1 18581 1b47A 304 1.72e+01 2cblA a.39.1.7 17381 a.48.1.1 17775 d.93.1.1 40529 1dugA 234 1.75e+01 1b8xA a.45.1.1 17718 c.47.1.5 33012 1oc0A 379 1.82e+01 e.1.1.1 86790 1cuk 203 1.83e+01 1hjp 1cukA 203 1.83e+01 a.5.1.1 16273 a.60.2.1 17946 b.40.4.2 25265 1t4oA 117 1.90e+01 d.50.1.1 106425 3buxB 329 1.97e+01 1yvhA 329 1.98e+01 a.39.1.7 124096 a.48.1.1 124097 d.93.1.1 124098 1uzeA 589 1.99e+01 d.92.1.5 108174 2hwvA 121 2.09e+01 2aieP 203 2.10e+01 1o4sA 389 2.13e+01 c.67.1.1 86620 1inlA 296 2.13e+01 c.66.1.17 66220 2qdyA 207 2.18e+01 2ahjA 206 2.19e+01 2ahjA d.149.1.1 41772 2a2aA 321 2.20e+01 2eqoA 140 2.21e+01 1a7cA 379 2.23e+01 1sek e.1.1.1 42660 1f3lA 321 2.24e+01 1g6q2 c.66.1.6 59630 1gotG 73 2.31e+01 1tbgE a.137.3.1 19629 2cz1A 206 2.43e+01 d.149.1.1 131033 1cp3A 277 2.44e+01 1pauA c.17.1.1 30992 2is9A 204 2.58e+01 2ghaA 382 2.58e+01 2p9oA 169 2.60e+01 1b80A 351 2.63e+01 1arv a.93.1.1 18579 1wz9A 375 2.65e+01 1h49A 512 2.67e+01 c.1.8.4 83477 1jytA 163 2.84e+01 b.94.1.1 67489 2b7uA 257 2.85e+01 2b1xA 470 2.87e+01 b.33.1.2 127675 d.129.3.3 127676 1m93C 41 2.92e+01 2jdjA 105 3.01e+01 2h36X 112 3.03e+01 2osoA 163 3.04e+01 1tbgE 68 3.06e+01 1tbgE a.137.3.1 19630 2fal 147 3.06e+01 2fal 1y6hA 177 3.06e+01 d.167.1.1 116505 2dhoA 235 3.08e+01 1q67A 231 3.10e+01 b.55.1.7 95960 1lj5A 379 3.21e+01 e.1.1.1 73928 2gbwB 174 3.25e+01 1kllA 130 3.27e+01 d.32.1.2 72720 1wdiA 345 3.30e+01 e.53.1.1 114535 1ahjA 207 3.31e+01 2ahjA d.149.1.1 41774 1widA 130 3.34e+01 b.142.1.2 114667 2icjA 233 3.41e+01 1qjbA 245 3.45e+01 1qjaA a.118.7.1 19202 1hdmB 193 3.46e+01 1hdmB b.1.1.2 21584 d.19.1.1 38158 1puoA 170 3.46e+01 a.101.1.1 95134 a.101.1.1 95135 1jbwA 428 3.47e+01 c.59.1.2 62860 c.72.2.2 62861 2bg9E 370 3.49e+01 1mtzA 293 3.50e+01 c.69.1.7 79467 1i1sA 96 3.50e+01 1bjaA a.4.5.9 16124 2oz4A 265 3.53e+01 1ckiA 317 3.56e+01 1csn d.144.1.7 41660 1xfuA 747 3.56e+01 1izlC 473 3.57e+01 i.5.1.1 76996 1qhdA 398 3.59e+01 1qhdA a.115.1.2 63324 b.19.1.1 63325 1uliB 187 3.61e+01 d.17.4.4 107923 1ui5A 215 3.61e+01 a.4.1.9 107856 a.121.1.1 107857 1iyhA 198 3.62e+01 a.45.1.1 83790 c.47.1.5 83791 1wi1A 126 3.63e+01 b.55.1.1 114658 2rccA 346 3.63e+01 1llpA 343 3.64e+01 a.93.1.1 18578 3bwgA 239 3.65e+01 1kz7A 353 3.72e+01 a.87.1.1 73333 b.55.1.1 73334 1uj2A 252 3.75e+01 c.37.1.6 99452 1yxaA 398 3.78e+01 2i10A 202 3.81e+01 a.4.1.9 136960 a.121.1.1 136961 1uzcA 71 3.85e+01 a.159.2.1 100222 1upsA 420 3.85e+01 b.29.1.2 113394 b.42.2.3 113395 2cmwA 310 3.96e+01