# List of top-scoring protein chains for t2k.100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1j53A 186 9.46e-03 c.55.3.5 77076 1j54A 186 9.67e-03 c.55.3.5 77077 2guiA 194 9.78e-03 c.55.3.5 135737 2uxuA 210 4.02e-02 2dbbA 151 6.05e-02 1iurA 88 7.79e-02 a.2.3.1 90704 1j6rA 214 1.44e-01 d.173.1.2 71598 1s9aA 257 2.20e-01 b.3.6.1 105379 2q4fA 149 6.95e-01 a.24.10.2 139847 1yviA 149 7.26e-01 a.24.10.2 124099 3sdhA 146 7.78e-01 3sdhA a.1.1.2 14984 2z8aA 146 7.86e-01 2ia0A 171 8.10e-01 1i1gA 141 8.40e-01 a.4.5.32 65982 d.58.4.2 65983 1wsuA 124 1.00e+00 a.4.5.35 121245 a.4.5.35 121246 1i5pA 633 1.19e+00 1i5pA b.18.1.3 61817 b.77.2.1 61818 f.1.3.1 61819 1ri7A 171 1.28e+00 a.4.5.32 97504 d.58.4.2 97505 2pn6A 150 1.38e+00 2f7tA 227 1.39e+00 2e7xA 150 1.48e+00 1lnwA 147 1.51e+00 a.4.5.28 78104 1yovA 537 1.53e+00 c.111.1.2 123785 1np7A 489 1.60e+00 a.99.1.1 80677 c.28.1.1 80678 2boqA 331 1.62e+00 2cfxA 144 1.70e+00 a.4.5.32 130395 d.58.4.2 130396 2cyyA 151 2.21e+00 a.4.5.32 131028 d.58.4.2 131029 1widA 130 2.49e+00 b.142.1.2 114667 2i6eA 301 2.55e+00 2oo2A 86 2.67e+00 2hwvA 121 2.78e+00 1dugA 234 2.95e+00 1b8xA a.45.1.1 17718 c.47.1.5 33012 1kqfC 217 3.07e+00 f.21.1.1 72874 1lxyA 409 3.11e+00 d.126.1.4 91154 1r7lA 110 3.13e+00 d.277.1.1 104837 1s9rA 410 3.18e+00 d.126.1.4 98758 2fb2A 340 3.22e+00 1lvaA 258 3.32e+00 a.4.5.35 74276 a.4.5.35 74277 a.4.5.35 74278 a.4.5.35 74279 2p5vA 162 3.34e+00 2qz8A 149 3.37e+00 1tv8A 340 3.70e+00 c.1.28.3 107352 2cg4A 152 4.46e+00 a.4.5.32 130417 d.58.4.2 130418 2glzA 153 4.58e+00 d.81.3.1 135348 1o4sA 389 4.87e+00 c.67.1.1 86620 2ejwA 332 4.96e+00 3bhyA 283 5.26e+00 1h97A 147 5.62e+00 1h97A a.1.1.2 60812 1b85A 351 5.62e+00 1arv a.93.1.1 18581 1u5tB 169 5.67e+00 a.4.5.54 107686 a.4.5.54 107687 2ivmA 150 6.08e+00 1ktzB 122 6.38e+00 g.7.1.3 68868 1ls6A 295 6.57e+00 c.37.1.5 91115 1nrjA 158 6.62e+00 d.110.4.4 86124 1wdiA 345 6.91e+00 e.53.1.1 114535 1g87A 614 6.92e+00 a.102.1.2 83275 b.2.2.2 83276 1mtzA 293 7.04e+00 c.69.1.7 79467 1fxxA 482 7.05e+00 1fxxA c.55.3.5 33726 3bhwA 209 7.23e+00 1keaA 221 7.26e+00 a.96.1.2 68491 1xqwA 293 7.28e+00 1b80A 351 7.42e+00 1arv a.93.1.1 18579 2igtA 332 7.48e+00 c.66.1.51 137401 2ejnA 153 8.22e+00 a.101.1.1 132279 a.101.1.1 132280 1zkrA 153 8.27e+00 a.101.1.1 125209 a.101.1.1 125210 2qxfA 482 8.36e+00 1m9zA 111 8.82e+00 g.7.1.3 78881 1xfuA 747 9.25e+00 1i1sA 96 9.34e+00 1bjaA a.4.5.9 16124 1llpA 343 9.88e+00 a.93.1.1 18578 1wdxA 69 9.94e+00 3caxA 369 1.01e+01 1tg0A 68 1.03e+01 2cycA 375 1.05e+01 2is9A 204 1.08e+01 2b0mA 393 1.08e+01 c.1.4.1 127644 1gotG 73 1.08e+01 1tbgE a.137.3.1 19629 2dfkA 402 1.10e+01 1eemA 241 1.14e+01 1eemA a.45.1.1 17717 c.47.1.5 33011 2ahjA 206 1.16e+01 2ahjA d.149.1.1 41772 1vddA 228 1.18e+01 e.49.1.1 108519 2qdyA 207 1.20e+01 1omwA 689 1.21e+01 a.91.1.1 87086 b.55.1.1 87087 d.144.1.7 87088 1iq9A 61 1.23e+01 g.7.1.1 90669 1s69A 124 1.23e+01 a.1.1.1 105305 2rhfA 77 1.23e+01 1z63A 500 1.25e+01 c.37.1.19 124502 c.37.1.19 124503 1puoA 170 1.27e+01 a.101.1.1 95134 a.101.1.1 95135 1sctB 151 1.29e+01 3sdhA a.1.1.2 15003 2j16A 182 1.29e+01 2au5A 139 1.32e+01 a.244.1.1 127322 2cz1A 206 1.33e+01 d.149.1.1 131033 2govA 195 1.35e+01 d.60.1.4 135447 1f4tA 368 1.35e+01 1f4tA a.104.1.1 18973 1d3gA 367 1.36e+01 1d3gA c.1.4.1 28600 1hx1B 114 1.36e+01 1hx1B a.7.7.1 61350 2cblA 305 1.41e+01 2cblA a.39.1.7 17380 a.48.1.1 17774 d.93.1.1 40528 1yvhA 329 1.42e+01 a.39.1.7 124096 a.48.1.1 124097 d.93.1.1 124098 2c5rA 67 1.42e+01 a.251.1.1 129944 1qqiA 104 1.44e+01 1opc a.4.6.1 16233 1b47A 304 1.45e+01 2cblA a.39.1.7 17381 a.48.1.1 17775 d.93.1.1 40529 2cqnA 77 1.46e+01 a.159.2.1 130726 2a2aA 321 1.46e+01 1wn0A 145 1.46e+01 a.24.10.2 121070 1yfsA 465 1.49e+01 a.203.1.1 123088 d.104.1.1 123089 1hleB 31 1.51e+01 1hleB 3bwgA 239 1.52e+01 6gsvA 217 1.56e+01 1b8xA a.45.1.1 17633 c.47.1.5 32925 1nktA 922 1.62e+01 a.162.1.1 85830 a.172.1.1 85831 c.37.1.19 85832 c.37.1.19 85833 3buxB 329 1.63e+01 1ckiA 317 1.65e+01 1csn d.144.1.7 41660 2hjmA 103 1.71e+01 2h4pB 34 1.76e+01 1ahjA 207 1.80e+01 2ahjA d.149.1.1 41774 2d1vA 108 1.81e+01 1bxeA 113 1.82e+01 1bxeA d.55.1.1 38898 1bjaA 95 1.83e+01 1bjaA a.4.5.9 16122 1f39A 101 1.86e+01 1umuA b.87.1.1 28386 1tyhA 248 1.89e+01 a.132.1.3 107458 2osoA 163 1.90e+01 2qcxA 263 1.91e+01 1z5zA 271 1.93e+01 c.37.1.19 124499 1qpaA 345 1.96e+01 1arv a.93.1.1 18585 1jlwA 219 1.99e+01 a.45.1.1 71741 c.47.1.5 71742 1smtA 122 1.99e+01 1smtA a.4.5.5 16109 1jksA 294 2.02e+01 d.144.1.7 71710 1yd0A 96 2.09e+01 2dhoA 235 2.11e+01 1i4jA 110 2.11e+01 d.55.1.1 76734 2cmwA 310 2.15e+01 2b1xA 470 2.17e+01 b.33.1.2 127675 d.129.3.3 127676 2qeuA 141 2.18e+01 1cp3A 277 2.18e+01 1pauA c.17.1.1 30992 1tffA 234 2.19e+01 d.3.1.11 106854 1r1tA 122 2.19e+01 a.4.5.5 104769 1mbaA 146 2.19e+01 a.1.1.2 15149 1mba 147 2.20e+01 2fal 2i7pA 362 2.21e+01 2p8eA 307 2.21e+01 1zy9A 564 2.23e+01 b.30.5.11 125813 c.1.8.13 125814 1vdyA 140 2.25e+01 1uzcA 71 2.26e+01 a.159.2.1 100222 1dm1A 146 2.27e+01 2fal a.1.1.2 15153 2icjA 233 2.30e+01 1b8xA 280 2.30e+01 1b8xA a.45.1.1 17739 c.47.1.5 33033 1zk8A 183 2.32e+01 a.4.1.9 125177 a.121.1.1 125178 1zbsA 291 2.35e+01 c.55.1.5 124870 c.55.1.5 124871 1x9fA 151 2.41e+01 a.1.1.2 114983 1h49A 512 2.49e+01 c.1.8.4 83477 1yakA 263 2.50e+01 a.132.1.3 122833 1ee2A 373 2.50e+01 2ohxA b.35.1.2 24663 c.2.1.1 29679 2ew5A 181 2.51e+01 1p4uA 153 2.51e+01 b.1.10.2 87780 2ahqA 76 2.51e+01 2izrA 330 2.51e+01 2i7nA 360 2.53e+01 2jhfA 374 2.55e+01 b.35.1.2 138314 c.2.1.1 138315 1a0rG 65 2.60e+01 1tbgE a.137.3.1 19639 1q8cA 151 2.61e+01 a.79.1.2 96202 1n8kA 374 2.62e+01 b.35.1.2 80298 c.2.1.1 80299 1axeA 374 2.66e+01 2ohxA b.35.1.2 24681 c.2.1.1 29697 1cuk 203 2.68e+01 1hjp 1cukA 203 2.68e+01 a.5.1.1 16273 a.60.2.1 17946 b.40.4.2 25265 1a71A 374 2.68e+01 2ohxA b.35.1.2 24673 c.2.1.1 29689 1kq8A 100 2.69e+01 a.4.5.14 68797 1i9sA 210 2.69e+01 1i9sA c.45.1.1 62099 1yrnA 61 2.71e+01 1akhA a.4.1.1 15981 2vouA 397 2.76e+01 1tbgE 68 2.78e+01 1tbgE a.137.3.1 19630 2dkoB 103 2.80e+01 1e4mM 501 2.89e+01 1e70M c.1.8.4 59226 2oqrA 230 2.89e+01 1e70M 501 2.90e+01 1e70M c.1.8.4 28926 2i10A 202 2.90e+01 a.4.1.9 136960 a.121.1.1 136961 2f2uA 402 2.92e+01 2ohxA 374 2.95e+01 2ohxA b.35.1.2 24669 c.2.1.1 29685 1xp2A 179 2.96e+01 3sil 379 2.98e+01 3sil 3silA 379 2.98e+01 b.68.1.1 27542 1wkoA 180 2.99e+01 2rccA 346 3.04e+01 2plrA 213 3.05e+01 1qmgA 524 3.06e+01 1qmgA a.100.1.2 18785 c.2.1.6 30182 1rfmA 344 3.06e+01 c.122.1.1 97385 1cfr 285 3.08e+01 1cfr 1cfrA 285 3.08e+01 c.52.1.7 33312 1xmxA 385 3.14e+01 c.52.1.26 115568 2ogeA 399 3.14e+01 2booA 247 3.15e+01 2vo9A 179 3.15e+01 1x2gA 337 3.17e+01 2dtcA 126 3.19e+01 1oedC 260 3.20e+01 f.36.1.1 86913 1oaiA 59 3.20e+01 a.5.2.3 81255 3bg2A 444 3.20e+01 2efvA 92 3.24e+01 1yo5C 97 3.26e+01 a.4.5.21 123768 3b73A 111 3.27e+01 1ys7A 233 3.28e+01 a.4.6.1 123961 c.23.1.1 123962 1j0sA 157 3.30e+01 b.42.1.2 90747 1qcrA 446 3.31e+01 1be3A d.185.1.1 59025 d.185.1.1 59026 1hgxA 183 3.31e+01 1tc1A c.61.1.1 34027 2fal 147 3.37e+01 2fal 1g59A 468 3.41e+01 a.97.1.1 60257 c.26.1.1 60258 1y74A 57 3.42e+01 a.194.1.1 122679 1xfxA 777 3.44e+01 2jf7A 532 3.45e+01 1apxA 249 3.49e+01 1ryc a.93.1.1 18669 1u59A 287 3.50e+01 d.144.1.7 107681 1l6xB 34 3.55e+01 k.13.1.1 73644 2pgfA 371 3.56e+01 1zylA 328 3.59e+01 1y0nA 78 3.68e+01 d.291.1.1 116305 1bia 321 3.74e+01 1bia 1biaA 321 3.74e+01 a.4.5.1 16083 b.34.1.1 24447 d.104.1.2 40787 1cbgA 490 3.78e+01 c.1.8.4 28933 1keyA 235 3.78e+01 a.118.16.1 72389 1izlC 473 3.79e+01 i.5.1.1 76996 2i9wA 184 3.81e+01 1kfrA 147 3.81e+01 a.1.1.2 72424 1l9lA 74 3.86e+01 a.64.1.1 77827 1qxhA 167 3.89e+01 c.47.1.10 96528 2pefA 373 3.95e+01 3ccyA 203 3.97e+01 1axgA 374 3.97e+01 2ohxA b.35.1.2 24691 c.2.1.1 29707 1hdmB 193 3.98e+01 1hdmB b.1.1.2 21584 d.19.1.1 38158 1e3dB 542 3.98e+01 1h2rL e.18.1.1 59189