# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ekfA	365	1.344	e.17.1.1	59445
2cg4A	152	2.986	a.4.5.32,d.58.4.2	130417,130418
2a1hA	365	3.075	e.17.1.1	125997
2coiA	386	3.950		
2p5vA	162	4.135		
2cfxA	144	6.733	a.4.5.32,d.58.4.2	130395,130396
2cyyA	151	7.065	a.4.5.32,d.58.4.2	131028,131029
2qz8A	149	7.841		
2ivmA	150	8.073		
2cmxA	118	11.56		
2vqcA	118	11.56		
1ri7A	171	13.27	a.4.5.32,d.58.4.2	97504,97505
1iurA	88	16.17	a.2.3.1	90704
1ve9A	347	16.37	c.4.1.2,d.16.1.3	100571,100572
1j54A	186	17.72	c.55.3.5	77077
2blcA	238	20.34		
2bl9A	238	21.52		
2e7xA	150	21.66		
2gqqA	163	21.97		
2dbbA	151	22.83		
1i1gA	141	29.15	a.4.5.32,d.58.4.2	65982,65983
1jmvA	141	29.94	c.26.2.4	66897
1r7lA	110	31.93	d.277.1.1	104837
2ia0A	171	33.31		
1yzfA	195	34.92	c.23.10.5	124275
3bxpA	277	36.92		
3cnyA	301	39.12		
1j3mA	129	40.22	d.129.7.1	103836
2ywiA	196	40.35		
3b73A	111	40.86		
2pn6A	150	41.72		
3bcxA	437	43.31		
1vypX	364	47.87	c.1.4.1	108905
1vyrA	364	48.22	c.1.4.1	108906
1tukA	67	48.67	a.52.1.1	119342
1i26A	34	53.29	g.3.6.3	65986
1q2hA	69	55.60	a.34.4.1	104498
1ktzB	122	63.95	g.7.1.3	68868
1wfwA	74	65.18	b.34.2.1	114595
1m9zA	111	65.40	g.7.1.3	78881
1r45A	204	67.49	d.166.1.1	111683
2adbA	148	67.87	d.58.7.1	126581
2rdkA	109	68.47		
2nr3A	183	70.67		
3bz6A	183	74.55		
2qbvA	90	77.49		
2zc2A	78	79.49		
1q67A	231	84.06	b.55.1.7	95960
1ctf	74	86.78		
2obiA	183	86.84