# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ekfA	365	1.739	e.17.1.1	59445
2cg4A	152	2.832	a.4.5.32,d.58.4.2	130417,130418
1ri7A	171	3.355	a.4.5.32,d.58.4.2	97504,97505
2p5vA	162	4.164		
2cyyA	151	5.969	a.4.5.32,d.58.4.2	131028,131029
2ivmA	150	7.439		
2qz8A	149	7.784		
2a1hA	365	8.080	e.17.1.1	125997
2cfxA	144	8.569	a.4.5.32,d.58.4.2	130395,130396
1iurA	88	9.515	a.2.3.1	90704
2cmxA	118	10.91		
2vqcA	118	10.91		
2coiA	386	11.03		
1j54A	186	11.09	c.55.3.5	77077
2blcA	238	12.07		
1i1gA	141	12.19	a.4.5.32,d.58.4.2	65982,65983
2ywiA	196	14.80		
2bl9A	238	17.18		
2e9xC	219	18.03		
2e7xA	150	21.23		
3bcxA	437	28.17		
1jmvA	141	28.80	c.26.2.4	66897
2ia0A	171	29.23		
1j3mA	129	32.04	d.129.7.1	103836
1tukA	67	34.18	a.52.1.1	119342
1q2hA	69	34.26	a.34.4.1	104498
1ve9A	347	35.27	c.4.1.2,d.16.1.3	100571,100572
2pn6A	150	36.19		
2dy0A	190	36.82		
2rdkA	109	37.07		
1r7lA	110	37.50	d.277.1.1	104837
1yzfA	195	38.47	c.23.10.5	124275
2dbbA	151	39.94		
1hleB	31	41.53		
1wfwA	74	46.67	b.34.2.1	114595
1juvA	193	47.74	c.71.1.1	90912
1ckiA	317	48.38	d.144.1.7	41660
1u5tB	169	50.03	a.4.5.54,a.4.5.54	107686,107687
3b73A	111	50.40		
3bxpA	277	51.80		
1fj2A	232	54.20	c.69.1.14	34720
1vypX	364	66.35	c.1.4.1	108905
1b0nB	57	71.39	a.34.1.1	17002
2nr3A	183	75.83		
1vyrA	364	76.51	c.1.4.1	108906
3cnyA	301	77.79		
2f9sA	151	78.45	c.47.1.10	133168
1q67A	231	81.31	b.55.1.7	95960
2gqqA	163	81.41		
3bz6A	183	81.96		
1m9zA	111	84.00	g.7.1.3	78881
1mzhA	225	85.56	c.1.10.1	79698
2fldA	165	89.84