# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ekfA	365	1.073	e.17.1.1	59445
1ri7A	171	2.204	a.4.5.32,d.58.4.2	97504,97505
2cg4A	152	2.972	a.4.5.32,d.58.4.2	130417,130418
2p5vA	162	4.959		
2cyyA	151	5.229	a.4.5.32,d.58.4.2	131028,131029
2bl9A	238	6.178		
2cmxA	118	7.032		
2vqcA	118	7.032		
2blcA	238	7.771		
2cfxA	144	8.527	a.4.5.32,d.58.4.2	130395,130396
2ywiA	196	8.542		
2ivmA	150	8.649		
3bcxA	437	9.206		
1j54A	186	9.355	c.55.3.5	77077
2qz8A	149	9.95		
1jmvA	141	10.51	c.26.2.4	66897
2gqqA	163	11.77		
1iurA	88	11.84	a.2.3.1	90704
2coiA	386	13.18		
2rdkA	109	13.61		
2a1hA	365	16.68	e.17.1.1	125997
2cx4A	164	18.01	c.47.1.10	130973
1q2hA	69	18.74	a.34.4.1	104498
1tukA	67	23.58	a.52.1.1	119342
2ia0A	171	23.72		
3cnyA	301	25.62		
2e9xC	219	26.79		
2f9sA	151	27.32	c.47.1.10	133168
1mzhA	225	27.63	c.1.10.1	79698
1j3mA	129	29.09	d.129.7.1	103836
3b73A	111	29.16		
1qh8A	478	30.19	c.92.2.3	35633
1q23A	219	31.61	c.43.1.1	104481
1i1gA	141	33.11	a.4.5.32,d.58.4.2	65982,65983
1vypX	364	34.09	c.1.4.1	108905
1kngA	156	35.56	c.47.1.10	72777
2nr3A	183	36.40		
2fldA	165	36.92		
1juvA	193	36.92	c.71.1.1	90912
1e5xA	486	37.01	c.79.1.1	59283
1n7kA	234	37.81	c.1.10.1	85374
2e7xA	150	38.04		
3bz6A	183	39.32		
1vyrA	364	39.81	c.1.4.1	108906
1tuvA	114	39.86	d.58.4.11	112665
2eb2A	334	41.44		
1ub3A	220	43.57	c.1.10.1	88395
1ckiA	317	45.20	d.144.1.7	41660
1b0nB	57	45.21	a.34.1.1	17002
2i9dA	217	48.87		
1qguA	478	49.47	c.92.2.3	35625
2dbbA	151	50.15		
1y97A	238	50.78	c.55.3.5	122773
1x8qA	184	51.85	b.60.1.1	114966
2dy0A	190	55.29		
1lu4A	136	55.31	c.47.1.10	91124
1w0hA	204	57.00	c.55.3.5	114064
2pagA	135	57.65		
2o8sA	323	59.20		
2pn6A	150	61.23		
1i1qA	520	61.36	d.161.1.1	61543
1yzfA	195	63.43	c.23.10.5	124275
2jf7A	532	64.07		
1d1dA	262	64.31	a.28.3.1,a.73.1.1	16958,18335
2ig3A	127	68.73		
2qu7A	288	72.93		
2guzA	71	74.73		
1i26A	34	78.75	g.3.6.3	65986
3b8xA	390	79.04		
1svsA	353	79.36	c.37.1.8	106051
1r7lA	110	79.46	d.277.1.1	104837
1hleB	31	80.15		
1oyc	400	86.33		
2h4pB	34	86.68		
2g7rA	117	86.80