# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ekfA	365	2.168	e.17.1.1	59445
2a1hA	365	3.479	e.17.1.1	125997
2vqcA	118	6.902		
2cmxA	118	8.559		
3cnyA	301	10.54		
2p5vA	162	16.97		
2ivmA	150	17.35		
2cyyA	151	17.84	a.4.5.32,d.58.4.2	131028,131029
2coiA	386	19.62		
2cg4A	152	22.91	a.4.5.32,d.58.4.2	130417,130418
1iurA	88	25.15	a.2.3.1	90704
1qh8A	478	26.69	c.92.2.3	35633
2dbbA	151	27.05		
1j54A	186	27.94	c.55.3.5	77077
2qz8A	149	29.07		
1b0nB	57	29.69	a.34.1.1	17002
1ve9A	347	33.99	c.4.1.2,d.16.1.3	100571,100572
1r7lA	110	35.35	d.277.1.1	104837
2ia0A	171	37.69		
2blcA	238	40.64		
1q23A	219	41.74	c.43.1.1	104481
1ri7A	171	41.86	a.4.5.32,d.58.4.2	97504,97505
2cfxA	144	43.66	a.4.5.32,d.58.4.2	130395,130396
1xmaA	145	44.72	a.4.5.61	115477
3b73A	111	47.09		
2bl9A	238	49.54		
1fj2A	232	51.50	c.69.1.14	34720
1qguA	478	53.97	c.92.2.3	35625
2nr3A	183	55.30		
2e9xC	219	55.90		
1jmvA	141	58.64	c.26.2.4	66897
1vypX	364	60.31	c.1.4.1	108905
2zc2A	78	60.88		
3bxpA	277	61.16		
2ywiA	196	61.92		
3bcxA	437	63.15		
3bz6A	183	63.43		
1q2hA	69	65.69	a.34.4.1	104498
2obiA	183	66.23		
1zynA	202	67.01	c.47.1.2,c.47.1.2	125838,125839
1knqA	175	70.11	c.37.1.17	72786
1pjrA	724	71.08	c.37.1.19,c.37.1.19	32391,32392
1vyrA	364	72.89	c.1.4.1	108906
2rdkA	109	76.01		
2erbA	125	77.78		
1tukA	67	78.14	a.52.1.1	119342
1g2yA	32	78.50	a.34.2.1	17003
2hjmA	103	79.89		
2qbvA	90	82.41		
1sfxA	109	82.78	a.4.5.50	105505
1r45A	204	86.83	d.166.1.1	111683