# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ekfA	365	6.746	e.17.1.1	59445
2a1hA	365	9.369	e.17.1.1	125997
2vqcA	118	10.06		
2cmxA	118	12.73		
2cyyA	151	19.26	a.4.5.32,d.58.4.2	131028,131029
2ivmA	150	20.77		
2coiA	386	20.96		
2p5vA	162	23.11		
1iurA	88	24.47	a.2.3.1	90704
1qh8A	478	30.49	c.92.2.3	35633
1j54A	186	30.67	c.55.3.5	77077
2qz8A	149	35.07		
2dbbA	151	35.09		
2cg4A	152	35.95	a.4.5.32,d.58.4.2	130417,130418
1jmvA	141	39.22	c.26.2.4	66897
3cnyA	301	41.12		
1knqA	175	43.29	c.37.1.17	72786
1ve9A	347	43.63	c.4.1.2,d.16.1.3	100571,100572
1q23A	219	44.90	c.43.1.1	104481
1ri7A	171	45.22	a.4.5.32,d.58.4.2	97504,97505
1r7lA	110	48.51	d.277.1.1	104837
2ia0A	171	53.84		
1b0nB	57	54.39	a.34.1.1	17002
3b73A	111	55.53		
1gkpA	458	57.94	b.92.1.3,c.1.9.6	70231,70232
2cfxA	144	58.38	a.4.5.32,d.58.4.2	130395,130396
1fj2A	232	60.92	c.69.1.14	34720
2obiA	183	62.02		
1qguA	478	63.06	c.92.2.3	35625
1r45A	204	64.31	d.166.1.1	111683
1xmaA	145	66.90	a.4.5.61	115477
2ywiA	196	70.74		
1sfxA	109	71.50	a.4.5.50	105505
3bcxA	437	71.98		
2bl9A	238	74.86		
2zc2A	78	75.65		
2blcA	238	77.34		
2e9xC	219	78.44		
1vypX	364	81.95	c.1.4.1	108905
1ctf	74	87.81		
1zynA	202	87.96	c.47.1.2,c.47.1.2	125838,125839