# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ekfA	365	5.513	e.17.1.1	59445
2a1hA	365	8.205	e.17.1.1	125997
2vqcA	118	11.71		
1qh8A	478	13.02	c.92.2.3	35633
2cmxA	118	14.99		
2cyyA	151	18.82	a.4.5.32,d.58.4.2	131028,131029
2ivmA	150	19.83		
3cnyA	301	20.33		
2p5vA	162	20.40		
1iurA	88	23.99	a.2.3.1	90704
1qguA	478	27.08	c.92.2.3	35625
1j54A	186	28.48	c.55.3.5	77077
1jmvA	141	29.07	c.26.2.4	66897
2cg4A	152	29.09	a.4.5.32,d.58.4.2	130417,130418
2qz8A	149	29.34		
2dbbA	151	34.44		
1q23A	219	35.18	c.43.1.1	104481
2coiA	386	35.66		
1b0nB	57	39.90	a.34.1.1	17002
1gkpA	458	40.85	b.92.1.3,c.1.9.6	70231,70232
1ri7A	171	41.57	a.4.5.32,d.58.4.2	97504,97505
2cfxA	144	45.54	a.4.5.32,d.58.4.2	130395,130396
1zynA	202	49.46	c.47.1.2,c.47.1.2	125838,125839
1ve9A	347	51.32	c.4.1.2,d.16.1.3	100571,100572
1vypX	364	52.51	c.1.4.1	108905
2bl9A	238	52.62		
1r7lA	110	55.19	d.277.1.1	104837
1xmaA	145	55.85	a.4.5.61	115477
2obiA	183	56.04		
2ia0A	171	56.93		
2blcA	238	59.39		
1vyrA	364	61.06	c.1.4.1	108906
1knqA	175	61.24	c.37.1.17	72786
2e9xC	219	62.14		
3bcxA	437	62.19		
1r45A	204	62.56	d.166.1.1	111683
3b73A	111	64.24		
2ywiA	196	68.77		
1q2hA	69	69.21	a.34.4.1	104498
1tukA	67	74.25	a.52.1.1	119342
1fj2A	232	74.55	c.69.1.14	34720
2adbA	148	80.56	d.58.7.1	126581
1mzhA	225	83.81	c.1.10.1	79698
1ctf	74	84.40		
1wfwA	74	89.50	b.34.2.1	114595
1lu4A	136	89.91	c.47.1.10	91124