# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ekfA	365	2.573	e.17.1.1	59445
2coiA	386	5.173		
2a1hA	365	5.518	e.17.1.1	125997
3b73A	111	11.57		
1yzfA	195	12.44	c.23.10.5	124275
1j54A	186	13.89	c.55.3.5	77077
1ri7A	171	20.77	a.4.5.32,d.58.4.2	97504,97505
2cg4A	152	22.70	a.4.5.32,d.58.4.2	130417,130418
2cmxA	118	28.31		
2vqcA	118	28.31		
2dbbA	151	35.76		
1w0hA	204	35.79	c.55.3.5	114064
1wxaA	116	37.98	d.15.1.5	121395
1fezA	256	44.23	c.108.1.3	43343
1e17A	150	44.81	a.4.5.14	16143
2ozpA	345	45.41		
2e9xC	219	46.17		
2it9A	127	47.69	d.18.1.3	137634
2ivmA	150	48.15		
1zhcA	76	49.75		
1tukA	67	57.35	a.52.1.1	119342
2cyyA	151	58.96	a.4.5.32,d.58.4.2	131028,131029
1knqA	175	60.67	c.37.1.17	72786
1iurA	88	61.78	a.2.3.1	90704
1gkpA	458	64.02	b.92.1.3,c.1.9.6	70231,70232
2v9dA	343	66.20		
2ns6A	185	68.76		
2pagA	135	69.01		
3bz6A	183	69.27		
1sfxA	109	69.86	a.4.5.50	105505
1y0nA	78	70.31	d.291.1.1	116305
2qz8A	149	72.27		
1a3aA	148	73.36	d.112.1.1	40917
2ogyA	262	73.91		
2gouA	365	75.46		
2p5vA	162	76.36		
2e7fA	262	76.55		
1wc3A	219	79.39	d.58.29.1	114495
1qguA	478	80.32	c.92.2.3	35625
1u5tB	169	85.48	a.4.5.54,a.4.5.54	107686,107687
2o8sA	323	85.96