# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ekfA	365	1.106	e.17.1.1	59445
2cg4A	152	5.340	a.4.5.32,d.58.4.2	130417,130418
2p5vA	162	5.673		
2ivmA	150	6.818		
2cyyA	151	7.785	a.4.5.32,d.58.4.2	131028,131029
2qz8A	149	8.839		
2cfxA	144	10.48	a.4.5.32,d.58.4.2	130395,130396
2cmxA	118	10.94		
2coiA	386	11.66		
2vqcA	118	12.12		
1ve9A	347	16.99	c.4.1.2,d.16.1.3	100571,100572
2ia0A	171	19.11		
2a1hA	365	20.19	e.17.1.1	125997
2e7xA	150	20.96		
1ri7A	171	22.19	a.4.5.32,d.58.4.2	97504,97505
1jmvA	141	24.06	c.26.2.4	66897
2blcA	238	24.90		
2rdkA	109	26.17		
2bl9A	238	26.45		
1iurA	88	29.80	a.2.3.1	90704
1j54A	186	31.12	c.55.3.5	77077
3cnyA	301	35.47		
2pn6A	150	40.66		
3b73A	111	41.50		
1i1gA	141	42.33	a.4.5.32,d.58.4.2	65982,65983
2gqqA	163	43.80		
2adbA	148	45.81	d.58.7.1	126581
2nr3A	183	46.93		
3bz6A	183	50.09		
1q23A	219	50.21	c.43.1.1	104481
2dbbA	151	54.45		
2ywiA	196	56.98		
1vyrA	364	65.04	c.1.4.1	108906
1vypX	364	65.25	c.1.4.1	108905
3bxpA	277	65.57		
1x9zA	188	65.99	d.292.1.1	115019
1mzhA	225	69.58	c.1.10.1	79698
1yzfA	195	73.66	c.23.10.5	124275
1gk9B	557	77.67		
1zzoA	136	78.51	c.47.1.10	125913
1j3mA	129	79.08	d.129.7.1	103836
2f9sA	151	80.71	c.47.1.10	133168
1q2hA	69	83.70	a.34.4.1	104498
2zc2A	78	85.31		
1gxuA	91	89.41	d.58.10.1	76378