# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2cg4A 152 1.828 a.4.5.32,d.58.4.2 130417,130418 1o0yA 260 2.225 c.1.10.1 80756 1mzhA 225 2.604 c.1.10.1 79698 2hlsA 243 6.469 1qw9A 502 6.648 b.71.1.2,c.1.8.3 96466,96467 2adbA 148 8.186 d.58.7.1 126581 1wvgA 359 8.229 c.2.1.2 121339 2a1hA 365 9.667 e.17.1.1 125997 2p5vA 162 10.06 2vqcA 118 11.43 1dgsA 667 12.83 a.60.2.2,b.40.4.6,d.142.2.2 17963,25365,41581 1i1gA 141 14.37 a.4.5.32,d.58.4.2 65982,65983 2b5tI 432 14.43 e.1.1.1 127905 2r7dA 469 15.01 2ivmA 150 16.67 2hfsA 332 17.02 2blcA 238 17.43 2cfxA 144 17.66 a.4.5.32,d.58.4.2 130395,130396 2cyyA 151 18.79 a.4.5.32,d.58.4.2 131028,131029 3fibA 249 21.09 d.171.1.1 42455 1xkyA 301 21.33 c.1.10.1 122094 1qh8A 478 21.69 c.92.2.3 35633 2cmxA 118 23.26 1lrzA 426 24.17 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1htyA 1015 26.58 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 2z07A 420 26.66 1ckiA 317 26.74 d.144.1.7 41660 2aorA 223 27.62 2d2jA 329 30.27 c.1.9.3 131175 2cfuA 658 30.27 1g0dA 695 30.57 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 1bmdA 327 30.61 c.2.1.5,d.162.1.1 30139,42106 1n7kA 234 31.20 c.1.10.1 85374 1q2hA 69 32.77 a.34.4.1 104498 1nbwB 117 34.63 c.51.3.2 80396 1ekfA 365 34.68 e.17.1.1 59445 2qeeA 437 34.82 2ia0A 171 35.50 2e7xA 150 37.10 1yspA 181 37.98 1ve5A 311 38.27 c.79.1.1 120013 1ub3A 220 40.04 c.1.10.1 88395 1ea9C 583 40.42 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 2p1zA 180 40.80 3vub 101 43.44 1h1nA 305 45.06 c.1.8.3 70855 1eg2A 319 46.31 c.66.1.11 34249 2q40A 367 46.44 e.50.1.1 139814 2bl9A 238 46.51 2f9sA 151 46.54 c.47.1.10 133168 1j54A 186 47.30 c.55.3.5 77077 1a1vA 476 47.44 c.37.1.14,c.37.1.14 32467,32468 2e9xC 219 47.83 1kngA 156 47.91 c.47.1.10 72777 1nthA 458 48.74 c.1.25.1 80730 1qwgA 251 49.07 c.1.27.1 96473 1vcvA 226 49.70 c.1.10.1 119988 1ui7A 638 49.73 b.30.2.1,d.17.2.1,d.17.2.1 99413,99414,99415 1l0gA 358 51.56 e.3.1.1 73400 1ldjA 760 54.35 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 3c8uA 208 54.53 2r6zA 258 55.46 1zyeA 220 55.48 c.47.1.10 125817 1ejxC 567 56.79 b.92.1.1,c.1.9.2 83184,83185 2ywiA 196 58.94 1ga6A 372 58.99 c.41.1.2 32556 1g79A 218 59.76 b.45.1.1 25752 1fieA 731 62.75 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 21879,22167,22168,37109 1s9jA 341 63.60 d.144.1.7 112049 1s5jA 847 63.73 c.55.3.5,e.8.1.1 112040,112041 9gafA 295 63.97 d.153.1.5 42008 1kgsA 225 64.68 a.4.6.1,c.23.1.1 68596,68597 3b9jB 350 64.88 1crkA 380 65.04 a.83.1.1,d.128.1.2 18458,41193 1dgwA 178 66.00 b.82.1.2 28090 1djxB 624 67.11 a.39.1.7,b.7.1.1,c.1.18.1 17343,23160,29588 1kutA 230 67.25 d.143.1.1 73017 2q3zA 687 68.19 2afgA 140 70.63 b.42.1.1 25514 1bihA 395 71.26 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21752,21753,21754,21755 2o02A 230 72.63 1n4kA 381 72.70 a.118.22.1,b.42.6.1 79992,79993 1cll 148 73.47 1o4yA 288 73.50 b.29.1.2 92473 2pn6A 150 73.92 1d8vA 263 73.99 d.165.1.1 42193 1de4C 640 75.63 a.48.2.1,c.8.4.1,c.56.5.5 17779,30760,33848 1x9zA 188 75.93 d.292.1.1 115019 3b73A 111 75.96 1ri7A 171 76.52 a.4.5.32,d.58.4.2 97504,97505 2z1mA 345 76.55 1cv2A 296 76.91 c.69.1.8 34680 1je0A 236 78.05 c.56.2.1 66581 1nz6A 101 78.20 a.2.3.1 86441 1ty9A 222 79.21 b.45.1.1 112827 1k32A 1045 79.71 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2pmlX 348 80.48 1bh5A 183 80.56 d.32.1.1 38476 3cnyA 301 81.87 3gcbA 470 82.62 d.3.1.1 37032 3c61A 314 83.29 1qguA 478 83.51 c.92.2.3 35625 2madH 373 83.92 b.69.2.1 27639 1qasA 622 84.79 a.39.1.7,b.7.1.1,c.1.18.1 17340,23157,29585 1vypX 364 84.83 c.1.4.1 108905 1iurA 88 85.00 a.2.3.1 90704 2ts1 419 86.18 2a9iA 113 86.63 1bpoA 494 86.87 a.118.1.4,b.69.6.1 19143,27670 1uteA 313 88.31 d.159.1.1 42078 1wfwA 74 88.69 b.34.2.1 114595