# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ekfA	365	2.761	e.17.1.1	59445
2p5vA	162	7.901		
2cg4A	152	8.102	a.4.5.32,d.58.4.2	130417,130418
2ivmA	150	8.913		
2cyyA	151	9.913	a.4.5.32,d.58.4.2	131028,131029
2qz8A	149	10.50		
2cmxA	118	11.61		
2vqcA	118	12.51		
1ve9A	347	14.52	c.4.1.2,d.16.1.3	100571,100572
2cfxA	144	14.64	a.4.5.32,d.58.4.2	130395,130396
2coiA	386	27.03		
2e7xA	150	28.05		
2blcA	238	30.29		
2ia0A	171	31.80		
3cnyA	301	33.22		
1x9zA	188	33.34	d.292.1.1	115019
2bl9A	238	33.97		
1jmvA	141	34.23	c.26.2.4	66897
1j54A	186	34.50	c.55.3.5	77077
1ri7A	171	35.41	a.4.5.32,d.58.4.2	97504,97505
1iurA	88	37.43	a.2.3.1	90704
1vypX	364	40.67	c.1.4.1	108905
1vyrA	364	42.62	c.1.4.1	108906
1mzhA	225	43.86	c.1.10.1	79698
1knqA	175	47.96	c.37.1.17	72786
3b73A	111	48.19		
2ywiA	196	48.62		
2pn6A	150	53.34		
2nr3A	183	54.05		
3bz6A	183	54.72		
1r45A	204	64.09	d.166.1.1	111683
3bcxA	437	66.39		
1i1gA	141	67.25	a.4.5.32,d.58.4.2	65982,65983
3bxpA	277	68.81		
2gqqA	163	70.85		
2rdkA	109	71.31		
1n7kA	234	74.64	c.1.10.1	85374
1yzfA	195	74.70	c.23.10.5	124275
2a1hA	365	78.35	e.17.1.1	125997
1r7lA	110	80.43	d.277.1.1	104837
1zhcA	76	84.13		
1wfwA	74	89.70	b.34.2.1	114595