# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ekfA	365	3.020	e.17.1.1	59445
3cnyA	301	9.571		
2cmxA	118	9.798		
2vqcA	118	9.798		
2ywiA	196	10.13		
1qh8A	478	11.16	c.92.2.3	35633
2cg4A	152	11.44	a.4.5.32,d.58.4.2	130417,130418
1ri7A	171	12.93	a.4.5.32,d.58.4.2	97504,97505
1qguA	478	14.11	c.92.2.3	35625
2coiA	386	15.26		
2p5vA	162	16.43		
1iurA	88	20.48	a.2.3.1	90704
2cyyA	151	21.42	a.4.5.32,d.58.4.2	131028,131029
1xi9A	406	22.06	c.67.1.1	115355
2ivmA	150	24.28		
2qz8A	149	26.23		
2cfxA	144	31.44	a.4.5.32,d.58.4.2	130395,130396
1tukA	67	32.21	a.52.1.1	119342
2f9sA	151	32.74	c.47.1.10	133168
1j54A	186	37.23	c.55.3.5	77077
2blcA	238	38.30		
2e9xC	219	39.98		
2bl9A	238	40.58		
1r7lA	110	41.24	d.277.1.1	104837
1ve9A	347	41.87	c.4.1.2,d.16.1.3	100571,100572
1i1gA	141	45.72	a.4.5.32,d.58.4.2	65982,65983
2a1hA	365	47.48	e.17.1.1	125997
1q2hA	69	50.52	a.34.4.1	104498
1zhcA	76	50.71		
1mzhA	225	53.86	c.1.10.1	79698
1fj2A	232	58.00	c.69.1.14	34720
3bcxA	437	58.31		
1jmvA	141	66.84	c.26.2.4	66897
3b73A	111	67.79		
1u5tB	169	69.77	a.4.5.54,a.4.5.54	107686,107687
2adbA	148	70.93	d.58.7.1	126581
2gqqA	163	71.05		
1b0nB	57	73.71	a.34.1.1	17002
1knqA	175	79.77	c.37.1.17	72786
2fldA	165	80.93		
2ia0A	171	84.84		
2nr3A	183	88.52		
1lu4A	136	89.28	c.47.1.10	91124