# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ekfA	365	2.228	e.17.1.1	59445
2coiA	386	6.423		
2cmxA	118	7.359		
2vqcA	118	7.359		
1ri7A	171	8.285	a.4.5.32,d.58.4.2	97504,97505
2cg4A	152	8.665	a.4.5.32,d.58.4.2	130417,130418
2ywiA	196	8.721		
2p5vA	162	11.95		
1iurA	88	12.53	a.2.3.1	90704
1j54A	186	12.82	c.55.3.5	77077
2cyyA	151	14.81	a.4.5.32,d.58.4.2	131028,131029
2ivmA	150	15.66		
2qz8A	149	16.27		
2a1hA	365	17.76	e.17.1.1	125997
2blcA	238	17.84		
3cnyA	301	18.59		
2cfxA	144	21.47	a.4.5.32,d.58.4.2	130395,130396
2bl9A	238	22.19		
1zhcA	76	22.82		
2gqqA	163	27.20		
1q2hA	69	27.21	a.34.4.1	104498
1mzhA	225	27.29	c.1.10.1	79698
1tukA	67	28.61	a.52.1.1	119342
1jmvA	141	29.98	c.26.2.4	66897
1i1gA	141	31.75	a.4.5.32,d.58.4.2	65982,65983
1fj2A	232	32.12	c.69.1.14	34720
1ve9A	347	34.64	c.4.1.2,d.16.1.3	100571,100572
2f9sA	151	41.55	c.47.1.10	133168
2e9xC	219	43.34		
1knqA	175	50.34	c.37.1.17	72786
1r7lA	110	50.98	d.277.1.1	104837
2fldA	165	55.50		
2nr3A	183	60.00		
1e5xA	486	60.34	c.79.1.1	59283
3b73A	111	61.89		
2ia0A	171	62.23		
3bz6A	183	63.35		
1lu4A	136	64.13	c.47.1.10	91124
1q23A	219	64.34	c.43.1.1	104481
2e7xA	150	64.46		
1gk9B	557	64.91		
1qh8A	478	66.56	c.92.2.3	35633
2uzhA	165	68.62		
2o8sA	323	69.15		
3bcxA	437	71.43		
1qguA	478	73.45	c.92.2.3	35625
1ub3A	220	77.42	c.1.10.1	88395
2qbvA	90	77.51		
1ewxA	146	78.61	c.47.1.10	33062
1b0nB	57	81.14	a.34.1.1	17002
1e3aB	560	81.82		
2v6vA	156	81.90		
2dbbA	151	83.87		
2c82A	413	86.36		
3bxpA	277	87.41		
2pn6A	150	87.63		
2rdkA	109	89.24		
1n7kA	234	89.55	c.1.10.1	85374