# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ekfA	365	1.487	e.17.1.1	59445
2coiA	386	4.894		
2cg4A	152	5.642	a.4.5.32,d.58.4.2	130417,130418
1ri7A	171	7.089	a.4.5.32,d.58.4.2	97504,97505
2p5vA	162	8.149		
2a1hA	365	8.366	e.17.1.1	125997
2cmxA	118	8.599		
2vqcA	118	8.599		
2ywiA	196	11.77		
3cnyA	301	12.35		
2cyyA	151	13.69	a.4.5.32,d.58.4.2	131028,131029
2cfxA	144	14.74	a.4.5.32,d.58.4.2	130395,130396
2ivmA	150	15.11		
2qz8A	149	15.34		
1j54A	186	15.83	c.55.3.5	77077
1iurA	88	16.25	a.2.3.1	90704
1ve9A	347	17.55	c.4.1.2,d.16.1.3	100571,100572
1i1gA	141	23.98	a.4.5.32,d.58.4.2	65982,65983
1fj2A	232	24.00	c.69.1.14	34720
1r7lA	110	28.88	d.277.1.1	104837
2f9sA	151	29.34	c.47.1.10	133168
2blcA	238	31.24		
1qguA	478	31.55	c.92.2.3	35625
1q2hA	69	33.58	a.34.4.1	104498
1qh8A	478	34.90	c.92.2.3	35633
1mzhA	225	34.91	c.1.10.1	79698
1b0nB	57	37.75	a.34.1.1	17002
2gqqA	163	38.34		
2dbbA	151	40.09		
2bl9A	238	40.50		
1tukA	67	40.68	a.52.1.1	119342
2nr3A	183	40.80		
3b73A	111	43.36		
1jmvA	141	49.86	c.26.2.4	66897
3bz6A	183	51.22		
2e7xA	150	53.24		
2ia0A	171	61.50		
1zhcA	76	63.89		
1r45A	204	69.55	d.166.1.1	111683
3bxpA	277	69.58		
3bcxA	437	80.24		
2e9xC	219	81.46		
2qbvA	90	81.86		
1vypX	364	82.32	c.1.4.1	108905
1n7kA	234	83.18	c.1.10.1	85374
1e5xA	486	83.44	c.79.1.1	59283
2pn6A	150	87.40		
2c8eE	211	89.63