# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ve9A	347	5.616	c.4.1.2,d.16.1.3	100571,100572
1knqA	175	15.11	c.37.1.17	72786
1ri7A	171	15.93	a.4.5.32,d.58.4.2	97504,97505
2cmxA	118	19.12		
2vqcA	118	19.12		
1xmaA	145	20.66	a.4.5.61	115477
3b73A	111	22.69		
2cg4A	152	22.81	a.4.5.32,d.58.4.2	130417,130418
1tukA	67	24.07	a.52.1.1	119342
2f82A	450	24.84		
2e9xC	219	26.11		
2a1hA	365	27.25	e.17.1.1	125997
1ekfA	365	27.78	e.17.1.1	59445
1pylA	97	40.00	d.1.1.2	104391
2ivmA	150	40.18		
3c8uA	208	44.20		
2c8eE	211	45.36		
2qz8A	149	45.50		
2cyyA	151	46.57	a.4.5.32,d.58.4.2	131028,131029
2qdjA	304	46.82		
2coiA	386	48.39		
2it9A	127	48.58	d.18.1.3	137634
1ktzB	122	50.90	g.7.1.3	68868
1ojqA	212	51.52	d.166.1.1	93146
1o6jA	150	51.53	c.47.1.10	81089
1tp9A	162	51.97	c.47.1.10	119306
1r45A	204	53.67	d.166.1.1	111683
1q25A	432	54.97	b.64.1.1,b.64.1.1,b.64.1.1	104493,104494,104495
1ewxA	146	55.51	c.47.1.10	33062
1j8rA	196	56.72	b.2.3.3	62745
1m9zA	111	66.37	g.7.1.3	78881
2a9kB	223	67.41	d.166.1.1	126443
1g8oA	310	67.94	c.68.1.9	60375
2fbwB	252	71.83		
1j54A	186	77.90	c.55.3.5	77077
2o8sA	323	80.33		
2ia0A	171	84.05		
2nxoA	291	87.19